samuel-floress-macbook-pro-3:trunk Sam$ python share/genCtypesStructs.py include/ParameterReader.h include/ParameterReader_wrapper.h share/pyMMB/params.py
Unknown type: // ParameterReader & operator = (const ParameterReader in ParameterReader
Unknown type: ErrorManager & in ParameterReader
Unknown type: // in ParameterReader
Unknown type: vector<CovalentBondClass> in ParameterReader
Unknown type: vector<IncludeIntraChainInterface> in ParameterReader
Unknown type: BasePairContainer in ParameterReader
Unknown type: map<const ChainResidueIndex, BasePairPartner,twoIndexCmp> in ParameterReader
Unknown type: // variables previously declared and initialized in in ParameterReader
Unknown type: //bool in ParameterReader
Unknown type: //bool in ParameterReader
Unknown type: //String in ParameterReader
Unknown type: //bool in ParameterReader
Unknown type: //int in ParameterReader
Unknown type: //int in ParameterReader
Unknown type: BondMobility::Mobility in ParameterReader
Unknown type: BondMobility::Mobility in ParameterReader
Unknown type: BondMobility::Mobility in ParameterReader
Unknown type: BondMobility::Mobility in ParameterReader
Unknown type: Vector in ParameterReader
Unknown type: LeontisWesthofClass in ParameterReader
Unknown type: // end of variables improted from in ParameterReader
Unknown type: //int in ParameterReader
Unknown type: //int in ParameterReader
Unknown type: //vector<Biopolymer> in ParameterReader
Unknown type: //vector<String> in ParameterReader
Unknown type: vector<int> in ParameterReader
Unknown type: map<const ChainResidueIndex, int,twoIndexCmp> in ParameterReader
Unknown type: //vector<double> in ParameterReader
Unknown type: //vector<int> in ParameterReader
Unknown type: //vector<double> in ParameterReader
Unknown type: //vector<int> in ParameterReader
Unknown type: /*vector<double> in ParameterReader
Unknown type: vector<int> in ParameterReader
Unknown type: vector<double> in ParameterReader
Unknown type: vector<int> in ParameterReader
Unknown type: LeontisWesthofClass in ParameterReader
Unknown type: mutable map<const String,double> in ParameterReader
Unknown type: DensityMap in ParameterReader
Unknown type: DensityMap in ParameterReader
Unknown type: MobilizerContainer in ParameterReader
Unknown type: PhysicsContainer in ParameterReader
Unknown type: ConstraintToGroundContainer in ParameterReader
Unknown type: DisplacementContainer in ParameterReader
Unknown type: AtomSpringContainer in ParameterReader
Unknown type: BiopolymerClassContainer in ParameterReader
Unknown type: MoleculeClassContainer in ParameterReader
Unknown type: WaterDropletContainer in ParameterReader
Unknown type: map<const String,String> in ParameterReader
Unknown type: map<const String,String> in ParameterReader
Unknown type: map<const String, int> in ParameterReader
Unknown type: map<const String,int>::iterator in ParameterReader
Unknown type: // //void addRingClosingBond(const String chainID, ResidueID residueID1, String atomName1,String bondCenterName1, ResidueID residueID2, String atomName2,String in ParameterReader
Unknown type: // void addC1pSprings (LeontisWesthofClass in ParameterReader
Unknown type: // void applyAtomSprings (SimbodyMatterSubsystem & matter, GeneralForceSubsystem & in ParameterReader
Unknown type: // void configureDumm( DuMMForceFieldSubsystem & in ParameterReader
Unknown type: // static double myAtoF(map<const String,double> myUserVariables,const char* value in ParameterReader
Unknown type: // static bool aToBool( const String& name, const char* value in ParameterReader
Unknown type: // static bool compareUpper( const String& param, const char* symbol in ParameterReader
Unknown type: vector<BasePair> in ParameterReader
Unknown type: ContactContainer in ParameterReader
Unknown type: DensityContainer in ParameterReader
Unknown type: DensityContainer in ParameterReader
Unknown type: vector<SingleBondMobility> in ParameterReader
Unknown type: vector<BasePairPartner> in ParameterReader
Unknown type: //vector<IncludeAllNonBondAtomsInResidue> in ParameterReader
Unknown type: vector<AllResiduesWithin> in ParameterReader
Unknown type: vector<IncludeNonBondAtomInBiopolymerStruct> in ParameterReader
Unknown type: vector <WaterDropletAboutResidueStruct> in ParameterReader
Unknown type: vector<MobilizerDomainsInterface> in ParameterReader
Unknown type: // void removeBasePairsInRigidStretch in ParameterReader
Unknown type: // void printAllSettings ( ostream & myOstream = std::cout, String remarkString = in ParameterReader
Unknown type: // void removeNonPriorityBasePairs (int in ParameterReader
Unknown type: // //int getFirstResidueNumbers(const String myChainId) in ParameterReader
Unknown type: // // int getProteinFirstResidueNumbers(const String myProteinChainId) in ParameterReader
Unknown type: // //int getBasePriority(int baseResidueNumber,String baseChain, String basePairingEdge) in ParameterReader
Unknown type: // // int getNumBasePairs() in ParameterReader
Unknown type: // void addAllResiduesWithin(String chainID, int resID, double in ParameterReader
Unknown type: // void updateAllResiduesWithin(int index, String chainID, int resID, double in ParameterReader
Unknown type: // void deleteAllResiduesWithin(int in ParameterReader
Unknown type: // void updateIncludeAllNonBondAtomsInResidue(int index, String chainID, int in ParameterReader
Unknown type: // void deleteIncludeAllNonBondAtomsInResidue(int in ParameterReader
Unknown type: // //int in ParameterReader
Unknown type: // //int calcLowestBondingResidue(const String in ParameterReader
Unknown type: // //int calcHighestBondingResidue(const String in ParameterReader
Unknown type: // void in ParameterReader
Unknown type: // void parameterStringInterpreter(const String & in ParameterReader
Unknown type: // void initializeFromFileOnly(const char * parameterFileName = "./commands.dat" in ParameterReader
Unknown type: // void setFirstAndLastStage(const char * parameterFileName = "./commands.dat" in ParameterReader
Unknown type: // void loadSequencesFromPdb(const char * in ParameterReader
Unknown type: // //void in ParameterReader
Unknown type: // // void in ParameterReader
Unknown type: // // void in ParameterReader
Unknown type: // void in ParameterReader
Unknown type: // void in ParameterReader
Unknown type: // void in ParameterReader
Unknown type: // void in ParameterReader
Unknown type: // void in ParameterReader
Unknown type: // // void initializeDefaults in ParameterReader
Unknown type: // void initializeDefaults(const char * leontisWesthofInFileName = in ParameterReader
Unknown type: // void initialize(const char * parameterFileName = "./commands.dat" in ParameterReader
Unknown type: // //bool chainIsBiopolymer(String myChainId in ParameterReader
Unknown type: // //bool chainIsMonoAtoms(String in ParameterReader
Unknown type: // //int getChainIndex(String myChainId , vector<Biopolymer> & in ParameterReader
Unknown type: MonoAtomsContainer in ParameterReader
Unknown type: //dutyCycle = in ParameterReader
Unknown type: //priority = in ParameterReader
samuel-floress-macbook-pro-3:trunk Sam$