[Feature-dev] [ feature-Bugs-1367 ] incorrect processing of pdb paths

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Bugs item #1367, was opened at 2010-09-27 01:17
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Category: Application - featurize
Group: Memory, bounds, rounding err
Status: Open
Resolution: None
Priority: 3
Submitted By: Gurgen Tumanyan (tumanian)
Assigned to: Nobody (None)
Summary: incorrect processing of pdb paths

Initial Comment:
revision: 740

description:featurize fails with segmentation fault when run with -P(pointfile) parameter and PDB_DIR and DSSP_DIR environment variables. 

how to repeat:
set PDB_DIR and DSSP_DIR to a directory with PDB and DSSP files, run featurize -P pointfile. fails with segmentation fault. 

workaround:
run without set PDB_DIR and DSSP_DIR from directory which contains both PDB and DSSP files


bug location: Utilities.cc, findProteinFile

platform: ubuntu i686, kernel 2.6.28-13



  

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You can respond by visiting: 
https://simtk.org/tracker/?func=detail&atid=145&aid=1367&group_id=16