[Nast-news] Re: Nast-news Digest, Vol 2, Issue 1

[ken]

Thank you Magda for the new file! The source code now compiles and the
test simulation was successfully run. Many thanks again for your help!

Ken


On Tue, 2009-11-03 at 12:00 -0800, nast-news-request at simtk.org wrote:
> Send Nast-news mailing list submissions to
> 	nast-news at simtk.org
> 
> To subscribe or unsubscribe via the World Wide Web, visit
> 	https://simtk.org/mailman/listinfo/nast-news
> or, via email, send a message with subject or body 'help' to
> 	nast-news-request at simtk.org
> 
> You can reach the person managing the list at
> 	nast-news-owner at simtk.org
> 
> When replying, please edit your Subject line so it is more specific
> than "Re: Contents of Nast-news digest..."
> 
> 
> Today's Topics:
> 
>    1. Re: unable to install NAST on ubuntu (64bit) (Magdalena Jonikas)
>    2. NAST now runs on 64bit Unix and Mac OSX Snow Leopard.
>       (Magdalena Jonikas)
> 
> 
> ----------------------------------------------------------------------
> 
> Message: 1
> Date: Mon, 2 Nov 2009 21:42:50 -0500
> From: Magdalena Jonikas <magdalena.jonikas at gmail.com>
> Subject: [Nast-news] Re: unable to install NAST on ubuntu (64bit)
> To: nast-news at simtk.org
> Message-ID:
> 	<3a0b25c0911021842y2017e2bdia42f93fc7fca317f at mail.gmail.com>
> Content-Type: text/plain; charset=ISO-8859-1
> 
> Hi Ken,
> 
> I've added a file called libOpenMM_static.a under the source files
> section on the NAST downloads page. This file is a library
> specifically for 64bit unix OS. Please replace the file of the same
> name in the nast-0.5/lib/linux/ directory. Then try building again.
> 
> Let me know how it works out.
> 
> -Magda
> 
> 
> > Date: Fri, 30 Oct 2009 15:37:05 -0400
> > From: ken <klee at lunenfeld.ca>
> > Subject: [Nast-news] unable to install NAST on ubuntu (64bit)
> > To: nast-news at simtk.org
> > Message-ID: <1256931425.6812.7.camel at ubuntu64>
> > Content-Type: text/plain
> >
> > Hi,
> >
> > I recently tried to install NAST on my laptop, which runs on 64-bit
> > ubuntu 8.04 but to no avail. The error message I received during the
> > installation process (after executing the command: python setup.py
> > build) is as follows:
> >
> > g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions
> > build/temp.linux-x86_64-2.5/src/swig_openmm/openmm_wrap.o -Llib/linux
> > -lOpenMM_static -o build/lib.linux-x86_64-2.5/simtk/_openmm.so
> > /usr/bin/ld: skipping incompatible lib/linux/libOpenMM_static.so when
> > searching for -lOpenMM_static
> > /usr/bin/ld: skipping incompatible lib/linux/libOpenMM_static.a when
> > searching for -lOpenMM_static
> > /usr/bin/ld: cannot find -lOpenMM_static
> > collect2: ld returned 1 exit status
> > error: command 'g++' failed with exit status 1
> >
> > Can anyone tell me how to get it to work? Many thanks.
> >
> > Ken
> >
> >
> > ------------------------------
> >
> > _______________________________________________
> > Nast-news mailing list
> > Nast-news at simtk.org
> > https://simtk.org/mailman/listinfo/nast-news
> >
> >
> > End of Nast-news Digest, Vol 1, Issue 1
> > ***************************************
> >
> 
> 
> ------------------------------
> 
> Message: 2
> Date: Tue, 3 Nov 2009 10:39:27 -0500
> From: Magdalena Jonikas <magdalena.jonikas at gmail.com>
> Subject: [Nast-news] NAST now runs on 64bit Unix and Mac OSX Snow
> 	Leopard.
> To: nast-news at simtk.org
> Message-ID:
> 	<3a0b25c0911030739r5eb01db7ta3ee82351fca84f5 at mail.gmail.com>
> Content-Type: text/plain; charset=ISO-8859-1
> 
> You can now build and install NAST on 64bit unix machines and Mac OSX
> machines running snow leopard.
> 
> **For 64bit unix**
> Download the library called "libOpenMM_static.a" which you will find
> under the source files section on the NAST downloads page. Replace the
> file with the same name in the nast-0.5/lib/linux/ directory. Then
> build, install, and test as described in the instructions.
> 
> **For Mac OSX snow leopard**
> You will need to use the 2.5 version of python on your snow leopard
> machine (default is 2.6). To change the default, type the following
> into your terminal: defaults write com.apple.versioner.python Version
> 2.5 If you do not want to change the default python, make sure you
> python "python2.5" instead of "python" every time you run a
> NAST-related python command. You will also need to download the
> "libOpenMM_static.a" file which you can find under the Mac OSX heading
> on the downloads page. Be sure to remove the extra " for snow leopard"
> from the file name when you download it. Place this file in the
> nast-0.5/lib/osx/ directory.
> 
> Cheers!
> -Magda Jonikas
> 
> 
> ------------------------------
> 
> _______________________________________________
> Nast-news mailing list
> Nast-news at simtk.org
> https://simtk.org/mailman/listinfo/nast-news
> 
> 
> End of Nast-news Digest, Vol 2, Issue 1
> ***************************************