[Simbiome-feedback] RE: Simbiome Resource Inventory - Beta Review

[Jon Dugan]

Russ, Vijay --

I've created a list to manage feedback on the Simbiome during the Beta
period, it is called simbiome-feedback.   I've added you to the list.

Currently the list goes to

Jon Dugan
Jeanette Schmidt
Michael Sherman
Bill Katz
Michael Levitt


Using a list will allow easier discussion of the content and process
for reviewing Simbiome.  Let me know if you want me to take you off.

Subject filter is [Simbiome-feedback]

Regards,
Jon

650 799 5369


On Tue, May 02, 2006 at 08:11:38AM -0700, Michael Levitt wrote:
> Dear Jon,
> 
>    The interface is clean and the information is well-presented. 
> I could see nothing to be removed .  As for adding, this is a 
> slow process that we need to think about more.  It also will
> likely make the resource deeper is certain narrow areas.
> Do you have  a format for suggesting additional areas?
> 
>    Actually, I would add a link to ProShape, Patrice Koehl's 
> exceptionally fast and robust software for protein geometry.
> (see: http://nook.cs.ucdavis.edu:8080/~koehl/research.html).
> I am sure this is much better than Surfnet.
> 
>    Also, Axel Brunger is now at Stanford so it X-PLOR still at Yale.
> There is a better package based on explore but in the public
> domain (I think) managed by Marius Clore at NIH.
> 
>    Another useful link is EBI MSD (Molecular Structure Database)
> which has better biological units in PQS.  A link to netlib, the database
> of legacy software with some amazing numerical routines is also 
> good.
> 
>     Michael
> 
> PS:  Perhaps set up a mailing list of your beta testers so that each 
> of our emails go to all the others.  That way, our memories will be 
> collectively jogged to add new resources.  To this end, I am copying my
> email
> to Sherm, Vijay and Russ.
> 
> -----Original Message-----
> From: owner-simbiosfac at lists.Stanford.EDU
> [mailto:owner-simbiosfac at lists.Stanford.EDU] On Behalf Of Jon Dugan
> Sent: Tuesday, May 02, 2006 12:21 AM
> To: Simbios Participants; Simbios Faculty
> Subject: Simbiome Resource Inventory - Beta Review
> 
> 
> Dear Simbios Participants and Faculty,
> 
> 
> As you may know we've been built an online resource inventory for the
> Simbios Center - we've called it the "Simbiome".  Back in February, we
> polled members of the Center for suggestions on what resources should
> initially be on the list.
> 
> Before we release Simbiome for public use, we would like your feedback.
> Specifically, we want you to look at the resources listed and let us know if
> there are ones we should add, or ones listed that should be removed. 
> 
> 
> The site is here:	http://simbiome.org
> 
> To access the site, use 
> 			UserName: beta
> 			Password: 123123
> 
> 
> There are instructions on the front page for what (& how) to review.
> Specifically, please go to the "List all resources" page
> 	      http://simbiome.org/resource/list and read through and see if
> there are other, trusted resources that you think we should recommend.
> 
> 
> You can reply to this email (simbiome-feedback at simtk.org) with suggestions,
> feedback, and helpful criticism.  Your time and feedback are greatly
> appreciated.  Please reply by May 8 (this week).
> 
> If you get really excited and want to add resources yourself - sign up for
> an user account and start adding!  Feedback on this process would be great
> too.
> 
> 
> Thank you.
> 
> 
> Regards,
> Jon
> 
> 
> 650 799 5369
> 
> 
> 
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