[Vp-integration-subgroup] [Vp-reproduce-subgroup] [EXT] Re: White paper submission - vote for venue

Tue May 11 23:51:47 PDT 2021

Dear all,

is the paper open for new contributions?

Best
Alexander

On Wed, 12 May 2021 at 06:42, Gilberto Gonzalez-Parra <
gilberto.gonzalezparra at nmt.edu> wrote:

> Dear all,
>
> I think that would be good if we send three main aspects that need to be
> improved in the paper. Thus, the meeting can run more smoothly since we
> will have some targets before.
>
>
> ***************************************************************************
> Gilberto C. Gonzalez-Parra, Ph.D in Applied Mathematics.
> Faculty of the Mathematics Department
> New Mexico Tech, NM, USA.
>
> ****************************************************************************
>
>
> On Tue, May 11, 2021 at 9:01 PM James Osborne <jmosborne at unimelb.edu.au>
> wrote:
>
>> Agreed
>>
>> I also think there needs to be an effort to make it more readable and
>> consistent throughout and from experience this can only happen by a small
>> group taking it on.
>>
>> James
>>
>> On Wed, May 12, 2021 at 12:38 PM Eric Forgoston <
>> eric.forgoston at montclair.edu> wrote:
>>
>>> * External email: Please exercise caution *
>>> ------------------------------
>>> Dear all,
>>>
>>> It is probably worth having a zoom chat to discuss the revision so that
>>> we are all working in concert.  In particular, John Gennari sent an email
>>> last week on May 3 with some thoughts that are well-worth discussing.
>>>
>>> Is there interest in doing this?
>>>
>>> Cheers,
>>>
>>> Eric
>>> ---------------------
>>> Dr. Eric Forgoston
>>> Professor of Applied Mathematics
>>> Chair, Department of Applied Mathematics and Statistics
>>> Montclair State University
>>> Montclair, NJ  07043 USA
>>> +1 973 655-7242
>>> https://eric-forgoston.github.io/
>>>
>>>
>>> On Tue, May 11, 2021 at 10:26 AM Jacob Barhak <jacob.barhak at gmail.com>
>>> wrote:
>>>
>>>> Greetings white paper contributors,
>>>>
>>>> The voting period is over and the vote did not change, so it is now
>>>> time to act.
>>>>
>>>> The paper will be revised as requested by 10 voters and the target
>>>> journal will be Bioinformatics - James Glazier and Yaling Liu will share
>>>> publication costs.
>>>>
>>>> All those who asked to revise are requested to make the revisions and
>>>> discuss those.
>>>>
>>>> I ask to reach a revised version by May 25 so that we can finish an
>>>> approval round by June 1st.
>>>>
>>>> So far only Sheriff provided suggestions for revisions prior to
>>>> submission so I suggest we start discussing those:
>>>>
>>>> https://docs.google.com/document/d/1Ag4ipuybjtthxgV0YjXqYP7AwwNSYcWh/edit
>>>>
>>>> However, since it is out of format and out of date, I suggest that all
>>>> those who want to make changes login and request to access the main
>>>> document and introduce changes there:
>>>>
>>>> https://docs.google.com/document/d/1IMEgmdNkx-EsnOjGuegpenSIMmKIkK00Lc8Gred3QxM/edit?usp=sharing
>>>>
>>>> I do ask that this will not be delayed any further and those who asked
>>>> for changes give this task priority so it can be completed in time.
>>>>
>>>> I look forward to your contributions.
>>>>
>>>>             Jacob
>>>>
>>>>
>>>> On Sun, May 9, 2021 at 4:25 PM Jacob Barhak <jacob.barhak at gmail.com>
>>>> wrote:
>>>>
>>>>> Greetings white paper contributors,
>>>>>
>>>>> Allow me to remind you that the Voting and vote changes are still
>>>>> possible until 11-May 1am CDT
>>>>>
>>>>> The current votes I saw are:
>>>>>
>>>>> 10 votes for revision
>>>>> Jonathan Karr
>>>>> Eric Forgoston
>>>>> William Waites
>>>>> James Glazier  - RS Interface or Bioinformatics
>>>>> Rahuman Sheriff
>>>>> Yaling Liu - Bioinformatics
>>>>> John Rice
>>>>> Winston Garira
>>>>> Gilberto Gonzalez-Parra
>>>>> James Osborne
>>>>>
>>>>> It seems 2 people supported Bioinformatics - James Glazier and Yaling
>>>>> Liu  so if this vote is accepted, they will split publication costs and the
>>>>> terget venue for revisions will be Bioinformatics.
>>>>>
>>>>> There is currently 1 minority vote:
>>>>> Jacob Barhak for direct submission to Nature -  Scientific Reports
>>>>>
>>>>> If revision is selected, time will be limited, so I suggest those who
>>>>> voted to start working on revisions.
>>>>>
>>>>> Hopefully this reminder will move us forward.
>>>>>
>>>>>             Jacob
>>>>>
>>>>>
>>>>>
>>>>> On Sat, May 1, 2021 at 12:18 PM Jacob Barhak <jacob.barhak at gmail.com>
>>>>> wrote:
>>>>>
>>>>>> Greetings white paper contributors,
>>>>>>
>>>>>> It is time to vote again for the target venue. Here are the options
>>>>>> again.
>>>>>>
>>>>>>    1. Cureus - resubmission after addressing editor comments
>>>>>>    2. Nature - if you vote for this venue please specify flavour
>>>>>>    such as Nature Scientific Reports
>>>>>>    3. Science
>>>>>>    4. Briefings in Bioinformatics
>>>>>>    5. Trends in Biotechnology - requires distilling the paper
>>>>>>    6. Journal of The Royal Society Interface
>>>>>>    7. Annual Review of Public Health
>>>>>>    8. BMJ
>>>>>>    9. Annual Review of Biomedical Engineering
>>>>>>    10. F1000research - if you vote for this this venue please
>>>>>>    specify Gateway / Collection
>>>>>>    11. bulletin of mathematical biology
>>>>>>    12. Bioinformatics.
>>>>>>    13. Do not submit now - instead open for revisions for 2 weeks
>>>>>>    and then submit. If you choose this option also vote for the target venue
>>>>>>    after revisions so that we will not have to delay further.
>>>>>>
>>>>>>
>>>>>> I will ask that contributors pick one journal from that list - I ask
>>>>>> that you REPLY ALL so votes will be transparent and time of vote will be
>>>>>> registered since first to vote will break ties.
>>>>>>
>>>>>> The voting period will be until Tuesday 11-May 1am CDT
>>>>>>
>>>>>> Again, if a journal costs for open publication, whoever voted, will
>>>>>> split publication costs. If anyone on this list is funded for this, please
>>>>>> vote.
>>>>>>
>>>>>> I urge contributors to vote - just so that we will have a preference
>>>>>> order to follow in case of rejection.
>>>>>>
>>>>>> Looking forward to your votes.
>>>>>>
>>>>>>             Jacob
>>>>>>
>>>>> _______________________________________________
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>>>>
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-- 
Alexander Kulesza
Team leader
Modeling & simulation / Biomodeling
alexander.kulesza at novadiscovery.com
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nova
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