[Vp-reproduce-subgroup] Recap from joint meeting regarding the white paper

[Jacob Barhak]

Greetings subgroups,

James Glazier the working group lead, indicated that the white paper
deadline of tomorrow is flexible, so it is possible to get additional
contributions to the white paper.

Therefore I will ask anyone who wanted to contribute and did not have the
chance to contribute to the paper until the end of the weekend.
Please send me an email to gain access - I will redacted you to the correct
draft. Here is again the link to the integrated version:
https://docs.google.com/document/d/1IMEgmdNkx-EsnOjGuegpenSIMmKIkK00Lc8Gred3QxM/edit?usp=sharing

Many of you contributed already and some even approved this assembled
manuscript - I asked those who have not approved already to wait a few more
days before reviewing the paper so that they can approve the final version
next week.

           Jacob





On Sat, Feb 20, 2021 at 3:59 AM Jacob Barhak <jacob.barhak at gmail.com> wrote:

> Greetings subgroups,
>
> As promised the merging of both papers have started.
>
> Here are some technicalities:
>
> The title of the jint white paper will be:
> Model Integration in Computational Biology: the Role of Reproducibility,
> Credibility and Utility
>
> The author of the paper will be:
> Multiscale Modeling and Viral Pandemics Working Group
>
> I looked through all the edit list on the paper and found the following
> contributors:
> Jonathan Karr
> Rahuman Sheriff
> James Osborne
> Gilberto Gonzalez Parra
> Eric Forgoston
> Ruth Bowness
> Yaling Liu
> Robin Thompson
> Winston Garira
> Anonymous contributor January 25, 2:13 PM
> Jacob Barhak
> John Rice
>
> The Anonymous contributor on January 25, 2:13 PM added the words: ". There
> are also challenges in gaining testable insight. Are they truly necessary?
> ". . However, unless the contributor identifies themselves, I cannot add
> their name and may remove this sentence since it seems misplaced and not
> attributed to any person.
>
> If I missed any contributor, please let me know so I can add the person to
> the list of contributors. I just looked at the changes history on the
> document and pulled names - if anyone added text using an account by
> someone else, let me know.
>
> Also, I will wait for a couple of more days for any last minute
> contributions. I will ask for anyone who wanted to contribute and did
> not have a chance to edit the papers directly over the weekend. I will do
> my best to integrate changes done over the weekend, yet I cannot guarantee
> adding any more changes - we had enough time to make those edits and  we
> need to wrap things up at some point.
>
> I will send the link to the combined draft paper once it is in good shape
> for approval.
>
> I will try my best to harmonize all contributions and maintain flow. Yet
> there are a lot of discussions and open end issues left, so I am not sure
> how practical it is.
>
> If anyone wants to help editing, let me know.
>
> Hopefully you will find the final product in good shape.
>
>               Jacob
>
>
>
>
>
>
>
>
> On Fri, Feb 12, 2021 at 10:26 AM Jacob Barhak <jacob.barhak at gmail.com>
> wrote:
>
>> Greetings to the model reproducibility, credibility and standardization
>> and integration subgroups
>>
>> In the joint meeting of the groups we discussed the papers and ideas
>> behind the merge as well as their own contributions to the working group
>> and paper.
>>
>> It was decided unanimously to merge the two white papers together.
>>
>> The white paper drafts are in good form currently and include a lot of
>> information. You can find them in these links:
>>
>>
>> https://docs.google.com/document/d/1voUSrSpv3AZlC1T-BLa3W4wzHQ5vEdJCVrBbwMUTDiQ/edit?usp=sharing
>>
>>
>> https://docs.google.com/document/d/1cqwXAjBWEiJZ1tUBnf66QVHdHd2fKq_W0py7t4PNVLo/edit?usp=sharing
>>
>> The group did not reach a conclusion on the title of the joint paper.
>> Suggestions for the title are welcome.
>>
>> Beyond what was discussed in the meeting I would like to add the
>> following:
>>
>> Since the deadline for the white paper is Feb 26th - it is suggested that
>> all contributors who want to join the author list of the white paper will
>> make edits until Feb 19th in the respective papers. This will allow time to
>> merge the papers together and send it to both lists.
>>
>> Unless someone else volunteers to help merge, I will personally start the
>> merge on Feb 20th, so contributions to the text after that date may not be
>> merged. Individuals who wish to be in the author list should contribute
>> text before that date and preferably write their name near the contributed
>> text.
>>
>> I personally look forward to more feedback and contributions.
>>
>>              Jacob
>>
>>
>>
>>
>>
>>
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