[Vp-reproduce-subgroup] [EXT] Re: [Vp-integration-subgroup] White paper submission - vote for venue

James Osborne jmosborne at unimelb.edu.au
Sun May 2 16:47:43 PDT 2021


Agree with revision however a lot of the reviewers issues are on
consistency and formatting so there need's to be some solid rules in place
for how to revise.

I suggest using leading venue as the template and having a small subgroup
responsible for formatting and editing to be consistent (shouldn't fall on
one person to do this as it will take time).

While I agree that there is substantial material here it suffers from being
overly long and feels like a document written by a lot of people. This
makes it hard to read and this good stuff gets lost! If we want people to
read it it should be easy to read.

I don't have access to OA funds at present but for what it's worth I
support the current leading venues (Bioinformatics and RS interface).

James

James

On Sun, May 2, 2021 at 8:51 AM Jacob Barhak <jacob.barhak at gmail.com> wrote:

> * External email: Please exercise caution *
> ------------------------------
> Thanks to all those who voted.
>
> Voting will continue so this is not final, yet since many seem to vote for
> revision, all those who wanted to revise should start preparing revisions.
> It is one thing to make a decision, it is quite another to invest the
> effort and actually contribute revisions - you can ask permission to edit
> the document with your google account - .I will grant those - yet I will
> not open it to anonymous contributions. If the revision option is
> eventually elected we will have 2 weeks of revisions and then an approval
> round of 1 week to reach consensus - meaning everyone must approve again .
> All contributors that wanted to get in will be able to contribute. I only
> ask that new contributors add substantial content - like address some of
> our open issues.
>
> If we do not reach consensus within 4 weeks which is 1 week till voting
> end + 2 weeks of revisions + 1 week of approval, the fall back position is
> the current version that already achieved consensus. And consensus here
> means unanimous agreement among all contributors - this is required legally
> for publication.
>
> In other words if we do not reach consensus within a month on a revised
> version, we will resubmit the already approved version since we already
> reached consensus there. And I suggest not to wait till the last minute -
> if all revisions come in the last day -  consensus may not be reached.
> People need time to look at the document. So please post your revisions as
> soon as possible. I am using those time scales since this is the month of
> May already - almost 1/3 of a year since we started - and much of it was
> wasted on waiting for people to react - I personally see this as dragging
> feet. The content we assembled is already substantial - any delay reduced
> the impact.
>
> When revising, please consider the venue. Currently it is either RS
> Interface or  Bioinformatics  yet this may change if others vote in a
> different direction - remember, you can change your vote and your last vote
> counts.
>
> Hopefully this email gives everyone sufficient time to react if indeed
> revision will be elected.
>
>                   Jacob
>
>
> On Sat, May 1, 2021 at 4:56 PM Yaling Liu <yal310 at lehigh.edu> wrote:
>
>> 13 - open for revision; Bioinformatics sounds good.
>>
>> Yaling
>>
>> On Sat, May 1, 2021 at 3:45 PM William Waites <wwaites at ieee.org> wrote:
>>
>>> Agree on 13 revision, though I am severely time-constrained for the next
>>> few weeks.
>>>
>>> No strong preference on venue but it’s good to have an idea of the
>>> audience we’re writing for. I like RS Interface or Bioinformatics. If this
>>> gets done before my MRC funding runs out, they will pay OA fees.
>>>
>>> Cheers,
>>> -w
>>>
>>>
>>> > On 1 May 2021, at 20:38, Eric Forgoston <eric.forgoston at montclair.edu>
>>> wrote:
>>> >
>>> > 13 - open for revision; no preference on venue.
>>> > ---------------------
>>> > Dr. Eric Forgoston
>>> > Professor of Applied Mathematics
>>> > Chair, Department of Applied Mathematics and Statistics
>>> > Montclair State University
>>> > Montclair, NJ  07043 USA
>>> > +1 973 655-7242
>>> > https://eric-forgoston.github.io/
>>> >
>>> >
>>> > On Sat, May 1, 2021 at 1:32 PM Jonathan Karr <jonrkarr at gmail.com>
>>> wrote:
>>> > #13 -- revise
>>> >
>>> > On Sat, May 1, 2021 at 1:18 PM Jacob Barhak <jacob.barhak at gmail.com>
>>> wrote:
>>> > Greetings white paper contributors,
>>> >
>>> > It is time to vote again for the target venue. Here are the options
>>> again.
>>> >       • Cureus - resubmission after addressing editor comments
>>> >       • Nature - if you vote for this venue please specify flavour
>>> such as Nature Scientific Reports
>>> >       • Science
>>> >       • Briefings in Bioinformatics
>>> >       • Trends in Biotechnology - requires distilling the paper
>>> >       • Journal of The Royal Society Interface
>>> >       • Annual Review of Public Health
>>> >       • BMJ
>>> >       • Annual Review of Biomedical Engineering
>>> >       • F1000research - if you vote for this this venue please specify
>>> Gateway / Collection
>>> >       • bulletin of mathematical biology
>>> >       • Bioinformatics.
>>> >       • Do not submit now - instead open for revisions for 2 weeks and
>>> then submit. If you choose this option also vote for the target venue after
>>> revisions so that we will not have to delay further.
>>> >
>>> > I will ask that contributors pick one journal from that list - I ask
>>> that you REPLY ALL so votes will be transparent and time of vote will be
>>> registered since first to vote will break ties.
>>> >
>>> > The voting period will be until Tuesday 11-May 1am CDT
>>> >
>>> > Again, if a journal costs for open publication, whoever voted, will
>>> split publication costs. If anyone on this list is funded for this, please
>>> vote.
>>> >
>>> > I urge contributors to vote - just so that we will have a preference
>>> order to follow in case of rejection.
>>> >
>>> > Looking forward to your votes.
>>> >
>>> >             Jacob
>>> > _______________________________________________
>>> > Vp-integration-subgroup mailing list
>>> > Vp-integration-subgroup at lists.simtk.org
>>> > https://lists.simtk.org/mailman/listinfo/vp-integration-subgroup
>>> > _______________________________________________
>>> > Vp-integration-subgroup mailing list
>>> > Vp-integration-subgroup at lists.simtk.org
>>> > https://lists.simtk.org/mailman/listinfo/vp-integration-subgroup
>>>
>>> _______________________________________________
>>> Vp-integration-subgroup mailing list
>>> Vp-integration-subgroup at lists.simtk.org
>>> https://lists.simtk.org/mailman/listinfo/vp-integration-subgroup
>>>
>>
>>
>> --
>> -- ------------------
>> Yaling Liu, Professor
>> Department of Mechanical Engineering and Mechanics
>> Department of Bioengineering
>> Lehigh University
>> www.lehigh.edu/~yal310
>> _______________________________________________
>> Vp-reproduce-subgroup mailing list
>> Vp-reproduce-subgroup at lists.simtk.org
>> https://lists.simtk.org/mailman/listinfo/vp-reproduce-subgroup
>>
>
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