<div dir="ltr">Dear all, <div><br></div><div>is the paper open for new contributions?</div><div><br></div><div>Best </div><div>Alexander</div></div><br><div class="gmail_quote"><div dir="ltr" class="gmail_attr">On Wed, 12 May 2021 at 06:42, Gilberto Gonzalez-Parra <<a href="mailto:gilberto.gonzalezparra@nmt.edu">gilberto.gonzalezparra@nmt.edu</a>> wrote:<br></div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex"><div dir="ltr">Dear all,<div><br></div><div>I think that would be good if we send three main aspects that need to be improved in the paper. Thus, the meeting can run more smoothly since we will have some targets before.</div><div><br></div><div><br></div><div><div><div dir="ltr"><div dir="ltr"><div><div dir="ltr"><div><div dir="ltr"><div><div dir="ltr">***************************************************************************</div><div dir="ltr">Gilberto C. Gonzalez-Parra, <span style="color:rgb(0,0,0);font-family:"Helvetica Neue",Helvetica,Arial,"Lucida Grande",sans-serif,serif,EmojiFont;font-size:13px">Ph.D in Applied Mathematics.</span></div><div dir="ltr"><font color="#000000" face="Helvetica Neue, Helvetica, Arial, Lucida Grande, sans-serif, serif, EmojiFont"><span style="font-size:13px">Faculty of the </span></font>Mathematics Department<div><div>New Mexico Tech, NM, USA.</div></div><div>****************************************************************************</div></div></div></div></div></div></div></div></div></div><br></div></div><br><div class="gmail_quote"><div dir="ltr" class="gmail_attr">On Tue, May 11, 2021 at 9:01 PM James Osborne <<a href="mailto:jmosborne@unimelb.edu.au" target="_blank">jmosborne@unimelb.edu.au</a>> wrote:<br></div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex"><div dir="ltr">Agreed <div><br></div><div>I also think there needs to be an effort to make it more readable and consistent throughout and from experience this can only happen by a small group taking it on.</div><div><br></div><div>James </div></div><br><div class="gmail_quote"><div dir="ltr" class="gmail_attr">On Wed, May 12, 2021 at 12:38 PM Eric Forgoston <<a href="mailto:eric.forgoston@montclair.edu" target="_blank">eric.forgoston@montclair.edu</a>> wrote:<br></div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex">
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Dear all,</div>
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It is probably worth having a zoom chat to discuss the revision so that we are all working in concert. In particular, John Gennari sent an email last week on May 3 with some thoughts that are well-worth discussing.
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<div>Is there interest in doing this?</div>
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<div>Cheers,</div>
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Dr. Eric Forgoston<br>
Professor of Applied Mathematics<br>
Chair, Department of </span><span><span><span>Applied Mathematics and Statistics</span></span><br>
Montclair State University<br>
Montclair, NJ 07043 USA<br>
+1 973 655-7242 <br>
<span><a href="https://eric-forgoston.github.io/" target="_blank">https://eric-forgoston.github.io/</a></span></span><br>
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<div dir="ltr" class="gmail_attr">On Tue, May 11, 2021 at 10:26 AM Jacob Barhak <<a href="mailto:jacob.barhak@gmail.com" target="_blank">jacob.barhak@gmail.com</a>> wrote:<br>
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<div dir="ltr">Greetings white paper contributors,<br>
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<div>The voting period is over and the vote did not change, so it is now time to act.</div>
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<div>The paper will be revised as requested by 10 voters and the target journal will be Bioinformatics - James Glazier and Yaling Liu will share publication costs.</div>
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<div>All those who asked to revise are requested to make the revisions and discuss those.</div>
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<div>I ask to reach a revised version by May 25 so that we can finish an approval round by June 1st.</div>
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<div>So far only Sheriff provided suggestions for revisions prior to submission so I suggest we start discussing those:</div>
<div><a href="https://docs.google.com/document/d/1Ag4ipuybjtthxgV0YjXqYP7AwwNSYcWh/edit" target="_blank">https://docs.google.com/document/d/1Ag4ipuybjtthxgV0YjXqYP7AwwNSYcWh/edit</a><br>
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<div>However, since it is out of format and out of date, I suggest that all those who want to make changes login and request to access the main document and introduce changes there:</div>
<div><a href="https://docs.google.com/document/d/1IMEgmdNkx-EsnOjGuegpenSIMmKIkK00Lc8Gred3QxM/edit?usp=sharing" target="_blank">https://docs.google.com/document/d/1IMEgmdNkx-EsnOjGuegpenSIMmKIkK00Lc8Gred3QxM/edit?usp=sharing</a><br>
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<div>I do ask that this will not be delayed any further and those who asked for changes give this task priority so it can be completed in time.</div>
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<div>I look forward to your contributions. </div>
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<div> Jacob</div>
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<div dir="ltr" class="gmail_attr">On Sun, May 9, 2021 at 4:25 PM Jacob Barhak <<a href="mailto:jacob.barhak@gmail.com" target="_blank">jacob.barhak@gmail.com</a>> wrote:<br>
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<div dir="ltr">Greetings white paper contributors,
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<div>Allow me to remind you that the Voting and vote changes are still possible until 11-May 1am CDT </div>
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<div>The current votes I saw are:</div>
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10 votes for revision<br>
Jonathan Karr<br>
Eric Forgoston<br>
William Waites<br>
James Glazier - RS Interface or Bioinformatics<br>
Rahuman Sheriff<br>
Yaling Liu - Bioinformatics<br>
John Rice<br>
Winston Garira<br>
Gilberto Gonzalez-Parra<br>
James Osborne</div>
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It seems 2 people supported Bioinformatics - James Glazier and Yaling Liu so if this vote is accepted, they will split publication costs and the terget venue for revisions will be Bioinformatics.
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There is currently 1 minority vote:<br>
Jacob Barhak for direct submission to Nature - Scientific Reports </div>
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<div>If revision is selected, time will be limited, so I suggest those who voted to start working on revisions. </div>
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<div>Hopefully this reminder will move us forward.</div>
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<div> Jacob</div>
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<div dir="ltr" class="gmail_attr">On Sat, May 1, 2021 at 12:18 PM Jacob Barhak <<a href="mailto:jacob.barhak@gmail.com" target="_blank">jacob.barhak@gmail.com</a>> wrote:<br>
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<div dir="ltr">Greetings white paper contributors,
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<div>It is time to vote again for the target venue. Here are the options again. </div>
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<li style="margin-left:15px">Cureus - resubmission after addressing editor comments</li><li style="margin-left:15px">Nature - if you <span>vote</span> for this venue please specify flavour such as Nature Scientific Reports</li><li style="margin-left:15px">Science</li><li style="margin-left:15px">Briefings in Bioinformatics</li><li style="margin-left:15px">Trends in Biotechnology - requires distilling the paper</li><li style="margin-left:15px">Journal of The Royal Society Interface<br>
</li><li style="margin-left:15px">Annual Review of Public Health<br>
</li><li style="margin-left:15px">BMJ</li><li style="margin-left:15px">Annual Review of Biomedical Engineering<br>
</li><li style="margin-left:15px">F1000research - if you <span>vote</span> for this this venue please specify Gateway / Collection </li><li style="margin-left:15px">bulletin of mathematical biology<br>
</li><li style="margin-left:15px">Bioinformatics.<br>
</li><li style="margin-left:15px">Do not submit now - instead open for revisions for 2 weeks and then submit. If you choose this option also vote for the target venue after revisions so that we will not have to delay further. </li></ol>
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<div>I will ask that contributors pick one journal from that list - I ask that you REPLY ALL so votes will be transparent and time of vote will be registered since first to vote will break ties.</div>
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<div>The voting period will be until Tuesday 11-May 1am CDT </div>
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<div>Again, if a journal costs for open publication, whoever voted, will split publication costs. If anyone on this list is funded for this, please vote. </div>
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<div>I urge contributors to vote - just so that we will have a preference order to follow in case of rejection.</div>
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<div>Looking forward to your votes. </div>
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<div> Jacob</div>
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</blockquote></div><br clear="all"><div><br></div>-- <br><div dir="ltr" class="gmail_signature"><div dir="ltr"><div style="font-family:sans-serif;font-size:13px;white-space:pre-wrap;padding:2px 0px 2px 13px;color:rgb(54,57,79)"><div style="font-stretch:normal;line-height:normal;white-space:normal;padding:2px 0px;color:rgb(35,35,73)">Alexander Kulesza</div><div style="font-stretch:normal;font-size:11px;line-height:normal;white-space:normal;padding:2px 0px;color:rgb(52,70,115)">Team leader</div><div style="font-stretch:normal;font-size:11px;line-height:normal;white-space:normal;padding:2px 0px;color:rgb(82,135,189)">Modeling & simulation / Biomodeling</div><div style="font-stretch:normal;font-size:11px;line-height:normal;white-space:normal;padding:2px 0px;color:rgb(128,134,150)"><a href="mailto:alexander.kulesza@novadiscovery.com" style="color:rgb(128,134,150)" target="_blank">alexander.kulesza@novadiscovery.com</a></div><div style="font-stretch:normal;font-size:11px;line-height:normal;white-space:normal;padding:2px 0px;color:rgb(128,134,150)">+33 7 82 92 44 62</div><div style="white-space:normal;width:100px;margin:15px 0px;font-size:28px;color:rgb(35,35,73)"><div style="font-family:Montserrat,arial;font-weight:600;letter-spacing:-1px">nova</div><div style="font-size:9px">DISCOVERY</div></div><div style="color:rgb(51,51,51);font-stretch:normal;font-size:11px;line-height:normal;white-space:normal;padding:2px 0px;margin:0px"><a href="http://www.novadiscovery.com/" title="Visit our website" style="color:rgb(128,134,150)" target="_blank">www.novadiscovery.com</a></div><div style="font-stretch:normal;font-size:11px;line-height:normal;white-space:normal;padding:2px 0px;color:rgb(128,134,150)">1 Place Verrazzano, 69009 Lyon<br>+33 9 72 53 13 01</div></div></div></div>
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