<html>
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<meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
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<p>Dear Jacob:</p>
<p>I see a lot of progress but the text is still fragmentary. I
think you will have a hard time having it reviewed before you
clean it up some more. <br>
</p>
<p>Frontiers is a reasonable place for it, and it does give you the
opportunity to do multiple rounds of review.</p>
<p>JAG<br>
</p>
<div class="moz-cite-prefix">On 8/16/2021 11:59 AM, Jacob Barhak
wrote:<br>
</div>
<blockquote type="cite"
cite="mid:CAM_y+3Qvx1FiX7=Uphw_4Bm=S+K+SAc+jNVQ_Y_7p+tvmbjarg@mail.gmail.com">
<meta http-equiv="content-type" content="text/html; charset=UTF-8">
<div dir="ltr">Hi Marcella,
<div><br>
</div>
<div>So far there were no objections and support in your
suggested venue was provided by 9 out of the 17 original
authors + support by many that joined later.</div>
<div><br>
</div>
<div>I have seen no objection to the venue by anyone. - meaning
that we can probably move on to the new venue and start the
process.</div>
<div><br>
</div>
<div>I suggest you move on and contact the editor and follow the
proper process for the venue and ask for feedback. </div>
<div><br>
</div>
<div>Please indicate that we are seeking review to guide further
revisions that we have already begun, yet not completed, so
there may be changes in title, authors, and text, yet the core
paper has been approved by 17 authors and major arguments will
most probably stay. </div>
<div><br>
</div>
<div>The version we can currently legally submit is this one
that we approved:</div>
<div><a
href="https://docs.google.com/document/d/1IMEgmdNkx-EsnOjGuegpenSIMmKIkK00Lc8Gred3QxM/edit?usp=sharing"
target="_blank" moz-do-not-send="true">https://docs.google.com/document/d/1IMEgmdNkx-EsnOjGuegpenSIMmKIkK00Lc8Gred3QxM/edit?usp=sharing</a><br>
</div>
<div><br>
</div>
<div>I locked that version for changes until the review process
is complete. </div>
<div><br>
</div>
<div>For the many who wanted revisions - we will have them still
- yet since we have not reached agreement on a revised
version, it will have to wait until after review. is provided
and we can incorporate reviewers comments in the revisions. </div>
<div><br>
</div>
<div>Marcella, please let us know if you will handle submission
and communications with the publication venue. - Frontiers in
Systems Biology</div>
<div><br>
</div>
<div>Regarding submission, I suggest starting with doing things
that do not take effort - like communicating with the editor
about this paper and declaring intention to see the response
we get. </div>
<div><br>
</div>
<div>While we wait for responses, we can continue discussion and
give a last chance for objections to Frontiers in Systems
Biology to arrive from the original 17 contributors. If any
objection to the venue appears before we get a response, we
will have to stop the process. </div>
<div><br>
</div>
<div>Hopefully the large support in the new venue will persist.</div>
<div><br>
</div>
<div>I suggest we start a new email thread regarding submission
and that we all get updated on the process to keep things
transparent. </div>
<div><br>
</div>
<div> Jacob</div>
<div><br>
</div>
<div><br>
</div>
<div><br>
</div>
<div><br>
</div>
<div><br>
</div>
<div><br>
</div>
</div>
<br>
<div class="gmail_quote">
<div dir="ltr" class="gmail_attr">On Wed, Aug 11, 2021 at 1:08
AM Gilberto Gonzalez-Parra <<a
href="mailto:gilberto.gonzalezparra@nmt.edu" target="_blank"
moz-do-not-send="true">gilberto.gonzalezparra@nmt.edu</a>>
wrote:<br>
</div>
<blockquote class="gmail_quote" style="margin:0px 0px 0px
0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex">
<div dir="ltr">Hi all,
<div><br>
</div>
<div>I think the new version is better, even though it is
not ready. The main points are there, which include the
importance of reproducibility and integration in modeling
biology systems.</div>
<div><br>
</div>
<div>Probably, one or two co-authors need to take the lead
to polish the article and references. I suggest that
these authors take some of the top positions in the list
of authors (in some places author position is taken into
account). </div>
<div><br>
</div>
<div>Venue seems fine.</div>
<div><br clear="all">
<div>
<div dir="ltr">
<div dir="ltr">
<div>
<div dir="ltr">
<div>
<div dir="ltr">
<div>
<div dir="ltr">***************************************************************************</div>
<div dir="ltr">Gilberto C.
Gonzalez-Parra, <span
style="color:rgb(0,0,0);font-family:"Helvetica
Neue",Helvetica,Arial,"Lucida
Grande",sans-serif,serif,EmojiFont;font-size:13px">Ph.D
in Applied Mathematics.</span></div>
<div dir="ltr"><font face="Helvetica Neue,
Helvetica, Arial, Lucida Grande,
sans-serif, serif, EmojiFont"
color="#000000"><span
style="font-size:13px">Faculty of
the </span></font>Mathematics
Department
<div>
<div>New Mexico Tech, NM, USA.</div>
</div>
<div>****************************************************************************</div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
<br>
</div>
</div>
<br>
<div class="gmail_quote">
<div dir="ltr" class="gmail_attr">On Tue, Aug 10, 2021 at
1:24 PM Rahuman Sheriff <<a
href="mailto:sheriff@ebi.ac.uk" target="_blank"
moz-do-not-send="true">sheriff@ebi.ac.uk</a>> wrote:<br>
</div>
<blockquote class="gmail_quote" style="margin:0px 0px 0px
0.8ex;border-left:1px solid
rgb(204,204,204);padding-left:1ex">
<div>I also agree with the venue and the suggestion to
tidy up the manuscript with a strict deadline.
<div>Sheriff</div>
<div><br>
<div><br>
<blockquote type="cite">
<div>On 10 Aug 2021, at 10:43, James Osborne <<a
href="mailto:jmosborne@unimelb.edu.au"
target="_blank" moz-do-not-send="true">jmosborne@unimelb.edu.au</a>>
wrote:</div>
<br>
<div>
<div dir="ltr"
style="font-family:Helvetica;font-size:12px;font-style:normal;font-variant-caps:normal;font-weight:normal;letter-spacing:normal;text-align:start;text-indent:0px;text-transform:none;white-space:normal;word-spacing:0px;text-decoration:none">I'm
fine with Frontiers.
<div><br>
</div>
<div>My 2 cents is that the revised version
would be more likely to get published. I
think we should find time to tidy up what we
need. </div>
<div><br>
</div>
<div>James</div>
</div>
<br
style="font-family:Helvetica;font-size:12px;font-style:normal;font-variant-caps:normal;font-weight:normal;letter-spacing:normal;text-align:start;text-indent:0px;text-transform:none;white-space:normal;word-spacing:0px;text-decoration:none">
<div class="gmail_quote"
style="font-family:Helvetica;font-size:12px;font-style:normal;font-variant-caps:normal;font-weight:normal;letter-spacing:normal;text-align:start;text-indent:0px;text-transform:none;white-space:normal;word-spacing:0px;text-decoration:none">
<div dir="ltr" class="gmail_attr">On Tue, Aug
10, 2021 at 5:11 PM Tomas Helikar <<a
href="mailto:thelikar2@unl.edu"
target="_blank" moz-do-not-send="true">thelikar2@unl.edu</a>>
wrote:<br>
</div>
<blockquote class="gmail_quote"
style="margin:0px 0px 0px
0.8ex;border-left:1px solid
rgb(204,204,204);padding-left:1ex">
<div>
<p>Hi everyone,</p>
<p>I'm also fine with this journal. But we
need to finalize the revised version --
lots of work was done on it already.</p>
<p>Perhaps we can recirculate the last
version of the google doc version of it
and set a deadline for finishing it? I
don't believe it would take more than a
couple of weeks to finalize.</p>
<p>Best wishes,</p>
<p>T.<br>
</p>
<div>
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rgb(174,177,166);font-size:11px;color:grey"><font
size="2.5px;" color="#0049FF">Tomas
Helikar, Ph.D.</font><span> </span><br>
Susan J Rosowski Associate Professor<span> </span><br>
Department of Biochemistry |
University of Nebraska-Lincoln<span> </span><br>
m: <a href="callto:402-547-8904"
style="color:rgb(0,136,204)"
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<div>On 8/9/21 5:06 PM, John Gennari
wrote:<br>
</div>
<blockquote type="cite">
<div><font face="sans-serif"
color="#FF6347">Non-NU Email</font>
<hr></div>
<p>I agree with Jon Karr. The venue is
fine, but we need at least a quick
review for readability before
submission.</p>
<p>-John G.<br>
</p>
<div>On 8/9/2021 7:49 AM, Jonathan Karr
wrote:<br>
</div>
<blockquote type="cite">
<div dir="ltr">Hi everyone,
<div><br>
</div>
<div>I think Frontiers is fine. I
think the key thing is to edit the
paper (for focus and readability
by a broader audience) before it
is submitted to any journal.</div>
<div><br>
</div>
<div>Regards</div>
<div>Jonathan</div>
</div>
<br>
<div class="gmail_quote">
<div dir="ltr" class="gmail_attr">On
Mon, Aug 9, 2021 at 10:31 AM Jacob
Barhak <<a
href="mailto:jacob.barhak@gmail.com"
target="_blank"
moz-do-not-send="true">jacob.barhak@gmail.com</a>>
wrote:<br>
</div>
<blockquote class="gmail_quote"
style="margin:0px 0px 0px
0.8ex;border-left:1px solid
rgb(204,204,204);padding-left:1ex">
<div dir="auto">Well Marcella,
<div dir="auto"><br>
</div>
<div dir="auto">If there is no
objection raised or an
alternative resolution with
more support appears, then I
see no reason not to proceed.
So I think we just need to
give enough time for original
contributors to raise an
objection or propose an
alternatives that will gain
more support. In the past we
used a week for such
processes, I guess that if we
wait until next weekend and no
objection is raised to the
venue or an alternative with
more support appears we can
proceed. We currently have 5
original contributors
supporting your suggested
venue and one contributor than
joined later in the revisions.</div>
<div dir="auto"><br>
</div>
<div dir="auto"><br>
</div>
<div dir="auto">Note that in
submission you should use the
original version we reached
consensus for submission, yet
note that that we plan to
revise the work and add more
contributors. You can point to
revisions we started. </div>
<div dir="auto"><br>
</div>
<div dir="auto">Lets wait until
next week and hope no one
objects so we can proceed
quickly. </div>
<div dir="auto"><br>
</div>
<div dir="auto"> Jacob</div>
<br>
<br>
<div class="gmail_quote"
dir="auto">
<div dir="ltr"
class="gmail_attr">On Mon,
Aug 9, 2021, 08:52 Torres,
Marcella <<a
href="mailto:mtorres@richmond.edu"
target="_blank"
moz-do-not-send="true">mtorres@richmond.edu</a>>
wrote:<br>
</div>
<blockquote
class="gmail_quote"
style="margin:0px 0px 0px
0.8ex;border-left:1px solid
rgb(204,204,204);padding-left:1ex">
<div lang="EN-US">
<div>
<p class="MsoNormal">Once
enough contributors
agree, the process for
submission is that
I’ll confirm interest
(I just got an email
requesting for this
this morning), let
them know that we
intend to submit 1
manuscript and what
the proposed title of
the manuscript is.
Once that initial
information is
submitted, then I will
be “emailed
information about next
steps”. Of course, at
any point we can also
contact the editorial
office, but would it
be helpful to get a
sense of the process
first and then ask for
clarification as
needed? At what point
will we have enough
responses from
contributors to begin?</p>
<div> <br>
</div>
<p class="MsoNormal">Best,</p>
<p class="MsoNormal">Marcella</p>
<div> <br>
</div>
<div
style="border-style:solid
none
none;border-top-width:1pt;border-top-color:rgb(181,196,223);padding:3pt
0in 0in">
<p class="MsoNormal"
style="margin-bottom:12pt"><b><span
style="font-size:12pt">From:<span> </span></span></b><span
style="font-size:12pt">Vp-reproduce-subgroup
<<a
href="mailto:vp-reproduce-subgroup-bounces@lists.simtk.org"
rel="noreferrer"
target="_blank"
moz-do-not-send="true">vp-reproduce-subgroup-bounces@lists.simtk.org</a>>
on behalf of John
Rice <<a
href="mailto:john.rice@noboxes.org"
rel="noreferrer"
target="_blank"
moz-do-not-send="true">john.rice@noboxes.org</a>><br>
<b>Date:<span> </span></b>Sunday,
August 8, 2021 at
7:23 PM<br>
<b>To:<span> </span></b>Yaling
Liu <<a
href="mailto:yal310@lehigh.edu"
rel="noreferrer"
target="_blank"
moz-do-not-send="true">yal310@lehigh.edu</a>><br>
<b>Cc:<span> </span></b><a
href="mailto:vp-reproduce-subgroup@lists.simtk.org" rel="noreferrer"
target="_blank"
moz-do-not-send="true">vp-reproduce-subgroup@lists.simtk.org</a><span> </span><<a
href="mailto:vp-reproduce-subgroup@lists.simtk.org" rel="noreferrer"
target="_blank"
moz-do-not-send="true">vp-reproduce-subgroup@lists.simtk.org</a>>,<span> </span><a
href="mailto:vp-integration-subgroup@lists.simtk.org" rel="noreferrer"
target="_blank"
moz-do-not-send="true">vp-integration-subgroup@lists.simtk.org</a><span> </span><<a
href="mailto:vp-integration-subgroup@lists.simtk.org" rel="noreferrer"
target="_blank"
moz-do-not-send="true">vp-integration-subgroup@lists.simtk.org</a>>,
Jonathan Karr <<a
href="mailto:jonrkarr@gmail.com" rel="noreferrer" target="_blank"
moz-do-not-send="true">jonrkarr@gmail.com</a>>,
John Gennari <<a
href="mailto:gennari@uw.edu" rel="noreferrer" target="_blank"
moz-do-not-send="true">gennari@uw.edu</a>>,
Faeder, James R
<<a
href="mailto:faeder@pitt.edu"
rel="noreferrer"
target="_blank"
moz-do-not-send="true">faeder@pitt.edu</a>>, Winston Garira <<a
href="mailto:Winston.Garira@univen.ac.za"
rel="noreferrer"
target="_blank"
moz-do-not-send="true">Winston.Garira@univen.ac.za</a>><br>
<b>Subject:<span> </span></b>Re:
[Vp-reproduce-subgroup] [Vp-integration-subgroup] White paper revision</span></p>
</div>
<div style="border:1pt
solid red;padding:2pt">
<p class="MsoNormal"
style="background-color:yellow"><b><span
style="font-size:10pt;font-family:Arial,sans-serif;color:red">External
Email:</span></b><span
style="font-size:10pt;font-family:Arial,sans-serif"> Use caution in
opening links,
attachments, and
buying gift cards.</span><span
style="font-size:10pt;font-family:Arial,sans-serif"></span></p>
</div>
<div> <br>
</div>
<div>
<p class="MsoNormal"
style="margin-bottom:12pt">Me
too</p>
<div>
<p class="MsoNormal">Typed
with two thumbs on
my iPhone. (757)
318-0671<span> </span></p>
<div>
<div> <br>
</div>
</div>
<div>
<div>
<p
class="MsoNormal">“Upon
this gifted
age, in its
dark hour,</p>
</div>
<div>
<p
class="MsoNormal">Rains
from the sky a
meteoric
shower</p>
</div>
<div>
<p
class="MsoNormal">Of
facts . . .
they lie
unquestioned,
uncombined.</p>
</div>
<div>
<p
class="MsoNormal">Wisdom
enough to
leech us of
our ill</p>
</div>
<div>
<p
class="MsoNormal">Is
daily spun;
but there
exists no loom</p>
</div>
<div>
<p
class="MsoNormal">To
weave it into
fabric.”</p>
</div>
<div>
<div> <br>
</div>
</div>
<div>
<p
class="MsoNormal">–Edna
St. Vincent
Millay,</p>
</div>
<div>
<div> <br>
</div>
</div>
<div>
<div> <br>
</div>
</div>
</div>
</div>
<div>
<p class="MsoNormal"
style="margin-bottom:12pt"><br>
On Aug 8, 2021, at
19:09, Yaling Liu
<<a
href="mailto:yal310@lehigh.edu"
rel="noreferrer"
target="_blank"
moz-do-not-send="true">yal310@lehigh.edu</a>> wrote:</p>
</div>
<div>
<p class="MsoNormal"><span> </span></p>
<div>
<p
class="MsoNormal">I
am fine with the
suggested new
venue and
willing to
revise further.
We don't need
to wait for
everyone to
reply here -
this email chain
is way too long
and guess a lot
of people were
busy and ignored
them.</p>
<div>
<div> <br>
</div>
</div>
<div>
<p
class="MsoNormal">Thanks.</p>
</div>
<div>
<div> <br>
</div>
</div>
<div>
<p
class="MsoNormal">Yaling</p>
</div>
</div>
<div> <br>
</div>
<div>
<div>
<p
class="MsoNormal">On
Sun, Aug 8,
2021 at 4:57
PM Jacob
Barhak <<a
href="mailto:jacob.barhak@gmail.com" rel="noreferrer" target="_blank"
moz-do-not-send="true">jacob.barhak@gmail.com</a>>
wrote:</p>
</div>
<blockquote
style="border-style:none
none none
solid;border-left-width:1pt;border-left-color:rgb(204,204,204);padding:0in
0in 0in
6pt;margin:5pt
0in 5pt 4.8pt">
<div>
<p
class="MsoNormal">Thanks
Hana, <span> </span></p>
<div>
<div> <br>
</div>
</div>
<div>
<p
class="MsoNormal">The
revised
version is far
from ready to
being
submitted
anywhere.
There is just
too much to do
there to put
it in shape
for
submission. </p>
</div>
<div>
<div> <br>
</div>
</div>
<div>
<p
class="MsoNormal">We
do want to
advance in
making
revisions,
yet the
attempt here
is to
accelerate the
process by
asking a 3rd
publishing
party to
provide proper
review for
what is
actually
needed for
publication,
so you may
want to save
your efforts
until after we
get feedback -
they will be
more effective
then when we
have
feedback. </p>
</div>
<div>
<div> <br>
</div>
</div>
<div>
<p
class="MsoNormal">However,
we do need
enough support
and no
objections to
proceed to
engage with
the new venue
suggested. </p>
</div>
<div>
<div> <br>
</div>
</div>
<div>
<p
class="MsoNormal">We
have currently
3 of the 17 of
the original
contributors
and 1 who
joined later
that approves
of a new
venue.
Hopefully
others will
follow so we
can proceed
quickly. </p>
</div>
<div>
<div> <br>
</div>
</div>
<div>
<p
class="MsoNormal">Thank
you for the
reply. </p>
</div>
<div>
<div> <br>
</div>
</div>
<div>
<p
class="MsoNormal">
<span> </span>Jacob</p>
</div>
<div>
<div> <br>
</div>
</div>
</div>
<div> <br>
</div>
<div>
<div>
<p
class="MsoNormal">On
Sat, Aug 7,
2021, 23:46
Dobrovolny,
Hana <<a
href="mailto:h.dobrovolny@tcu.edu"
rel="noreferrer" target="_blank" moz-do-not-send="true">h.dobrovolny@tcu.edu</a>>
wrote:</p>
</div>
<blockquote
style="border-style:none
none none
solid;border-left-width:1pt;border-left-color:rgb(204,204,204);padding:0in
0in 0in
6pt;margin:5pt
0in 5pt 4.8pt">
<div>
<div
id="gmail-m_-2501105178215063338gmail-m_-4770028938192598232gmail-m_-8595028391363473299gmail-m_3218733467120122652gmail-m_-7038258438093066422gmail-m_6686079875447190907m_-6359702125158232037gmail-m_-3222322118285752855m_2418018346964135372divtagdefaultwrapper">
<p><span
style="font-size:12pt">I'm
fine with the
suggested
venue. I'll
double check
the sections I
was heading
sometime this
week, but I
think all
suggestions
were
incorporated
last time I
checked.</span></p>
<p><span
style="font-size:12pt">Hana</span></p>
<div><span
style="font-size:12pt"> </span><br>
</div>
<div
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<div>
<p
class="MsoNormal"><span
style="font-size:10pt">*******************************************************<br>
Dr. Hana
Dobrovolny<br>
Associate
Professor of
Biophysics<br>
Texas
Christian
University<br>
TCU Box 298840<br>
Fort Worth, TX
76129<br>
<br>
phone: (817)
257-6379 fax:
(817) 257-7742<br>
email:<span> </span></span><a
href="mailto:h.dobrovolny@tcu.edu" rel="noreferrer" target="_blank"
moz-do-not-send="true"><span
style="font-size:10pt">h.dobrovolny@tcu.edu</span></a><span
style="font-size:10pt"><br>
*******************************************************</span></p>
</div>
</div>
</div>
</div>
<div
style="margin-bottom:12pt"><span
style="font-size:12pt"> </span><br>
</div>
<div>
<div
class="MsoNormal"
style="text-align:center" align="center"><span style="font-size:12pt">
<hr
width="100%"
size="0"
align="center"></span></div>
<div
id="gmail-m_-2501105178215063338gmail-m_-4770028938192598232gmail-m_-8595028391363473299gmail-m_3218733467120122652gmail-m_-7038258438093066422gmail-m_6686079875447190907m_-6359702125158232037gmail-m_-3222322118285752855m_2418018346964135372divRplyFwdMsg">
<p
class="MsoNormal"><b><span>From:</span></b><span><span> </span>Vp-reproduce-subgroup
<</span><a
href="mailto:vp-reproduce-subgroup-bounces@lists.simtk.org"
rel="noreferrer"
target="_blank" moz-do-not-send="true">vp-reproduce-subgroup-bounces@lists.simtk.org</a><span>>
on behalf of
Jacob Barhak
<</span><a
href="mailto:jacob.barhak@gmail.com" rel="noreferrer" target="_blank"
moz-do-not-send="true">jacob.barhak@gmail.com</a><span>><br>
<b>Sent:</b><span> </span>August
7, 2021 11:18
AM<br>
<b>To:</b><span> </span>Torres,
Marcella<br>
<b>Cc:</b><span> </span></span><a
href="mailto:vp-reproduce-subgroup@lists.simtk.org" rel="noreferrer"
target="_blank"
moz-do-not-send="true">vp-reproduce-subgroup@lists.simtk.org</a><span>;<span> </span></span><a
href="mailto:vp-integration-subgroup@lists.simtk.org" rel="noreferrer"
target="_blank"
moz-do-not-send="true">vp-integration-subgroup@lists.simtk.org</a><span>;
Jonathan Karr;
John Gennari;
Winston
Garira;
Faeder, James
R<br>
<b>Subject:</b><span> </span>Re:
[Vp-reproduce-subgroup] [Vp-integration-subgroup] White paper revision</span><span
style="font-size:12pt"></span></p>
<div>
<div><span
style="font-size:12pt"> </span><br>
</div>
</div>
</div>
<div>
<p><strong><span
style="font-size:12pt;font-family:Calibri,sans-serif;background-color:yellow">[EXTERNAL
EMAIL WARNING]</span></strong><span
style="font-size:12pt;background-color:yellow"> DO NOT CLICK LINKS or
open
attachments
unless you
recognize the
sender and
know the
content is
safe.</span><span
style="font-size:12pt"></span></p>
<div>
<div>
<p
class="MsoNormal"><span
style="font-size:12pt;font-family:Arial,sans-serif">And to all white
paper
contributors,</span><span
style="font-size:12pt"></span></p>
<div>
<div><span
style="font-size:12pt;font-family:Arial,sans-serif"> </span><br>
</div>
</div>
<div>
<p
class="MsoNormal"><span
style="font-size:12pt;font-family:Arial,sans-serif">You are getting this
message to
raise it to
the top of
your
mailboxes. </span></p>
</div>
<div>
<div><span
style="font-size:12pt;font-family:Arial,sans-serif"> </span><br>
</div>
</div>
<div>
<p
class="MsoNormal"><span
style="font-size:12pt;font-family:Arial,sans-serif">Hopefully enough of
you will look
at this during
the weekend to
comment on the
best way to
move forward
while
considering
the new offer
from
Marcella. </span></p>
</div>
<div>
<div><span
style="font-size:12pt;font-family:Arial,sans-serif"> </span><br>
</div>
</div>
<div>
<p
class="MsoNormal"><span
style="font-size:12pt;font-family:Arial,sans-serif">The faster we move,
the better. </span></p>
</div>
<div>
<div><span
style="font-size:12pt;font-family:Arial,sans-serif"> </span><br>
</div>
</div>
<div>
<p
class="MsoNormal"><span
style="font-size:12pt;font-family:Arial,sans-serif"> <span> </span>Jacob</span></p>
</div>
<div>
<div><span
style="font-size:12pt;font-family:Arial,sans-serif"> </span><br>
</div>
</div>
<div>
<div><span
style="font-size:12pt;font-family:Arial,sans-serif"> </span><br>
</div>
</div>
</div>
<div><span
style="font-size:12pt"> </span><br>
</div>
<div>
<div>
<p
class="MsoNormal"><span
style="font-size:12pt">On Tue, Aug 3, 2021, 01:03 Jacob Barhak <</span><a
href="mailto:jacob.barhak@gmail.com" rel="noreferrer" target="_blank"
moz-do-not-send="true"><span
style="font-size:12pt">jacob.barhak@gmail.com</span></a><span
style="font-size:12pt">>
wrote:</span></p>
</div>
<blockquote
style="border-style:none
none none
solid;border-left-width:1pt;border-left-color:rgb(204,204,204);padding:0in
0in 0in
6pt;margin:5pt
0in 5pt 4.8pt">
<div>
<p
class="MsoNormal"><span
style="font-size:12pt">Thanks Marcella, <span> </span></span></p>
<div>
<div><span
style="font-size:12pt"> </span><br>
</div>
</div>
<div>
<p
class="MsoNormal"><span
style="font-size:12pt">Your suggestion may be the solution here. </span></p>
</div>
<div>
<div><span
style="font-size:12pt"> </span><br>
</div>
</div>
<div>
<p
class="MsoNormal"><span
style="font-size:12pt">From what I see, this venue is a good fit. Yet
we need to
learn the
opinion of the
other
contributors. </span></p>
</div>
<div>
<div><span
style="font-size:12pt"> </span><br>
</div>
</div>
<div>
<p
class="MsoNormal"><span
style="font-size:12pt">If we collect enough support and no contributor
objects, we
can approach
the editor and
ask if the
paper will
receive proper
review to
guide
revisions. </span></p>
</div>
<div>
<div><span
style="font-size:12pt"> </span><br>
</div>
</div>
<div>
<p
class="MsoNormal"><span
style="font-size:12pt">I look forward for more responses. </span></p>
</div>
<div>
<div><span
style="font-size:12pt"> </span><br>
</div>
</div>
<div>
<p
class="MsoNormal"><span
style="font-size:12pt"> <span> </span>Jacob</span></p>
</div>
<div>
<div><span
style="font-size:12pt"> </span><br>
</div>
</div>
</div>
<div><span
style="font-size:12pt"> </span><br>
</div>
<div>
<div>
<p
class="MsoNormal"><span
style="font-size:12pt">On Mon, Aug 2, 2021, 11:57 Torres, Marcella <</span><a
href="mailto:mtorres@richmond.edu" rel="noreferrer" target="_blank"
moz-do-not-send="true"><span
style="font-size:12pt">mtorres@richmond.edu</span></a><span
style="font-size:12pt">>
wrote:</span></p>
</div>
<blockquote
style="border-style:none
none none
solid;border-left-width:1pt;border-left-color:rgb(204,204,204);padding:0in
0in 0in
6pt;margin:5pt
0in 5pt 4.8pt">
<div>
<div>
<p
class="MsoNormal"><span
style="font-size:12pt">Hi all and Jacob,</span></p>
<div><span
style="font-size:12pt"> </span><br>
</div>
<p
class="MsoNormal"><span
style="font-size:12pt">I’m interested in getting it circulated, and want
to propose
Frontiers in
Systems
Biology as a
possible venue
– I just
joined the
editorial
board and
received
notice of a
focused issue
that includes
challenges in
multiscale
modeling:<span> </span></span><a
href="https://urldefense.com/v3/__https:/www.frontiersin.org/research-topics/24484/insights-in-systems-biology-multiscale-mechanistic-modeling-2021?utm_source=F-RTM&utm_medium=CFP_E1&utm_campaign=PRD_CFP_T1_RT-TITLE*__;Iw!!K6Z8K8YTIA!VdlFMCuGyTWxTFwAHTufvXzSxbtUQ9ckyDlofvqR1sm1Q-6-HD2vdZtc_2WFepwnGQ8$"
rel="noreferrer" target="_blank" moz-do-not-send="true"><span
style="font-size:12pt">https://www.frontiersin.org/research-topics/24484/insights-in-systems-biology-multiscale-mechanistic-modeling-2021?utm_source=F-RTM&utm_medium=CFP_E1&utm_campaign=PRD_CFP_T1_RT-TITLE#</span></a><span
style="font-size:12pt"><span> </span>.</span></p>
<div><span
style="font-size:12pt"> </span><br>
</div>
<p
class="MsoNormal"><span
style="font-size:12pt">The journal is new, and I don’t remember it being
proposed
previously.</span></p>
<div><span
style="font-size:12pt"> </span><br>
</div>
<p
class="MsoNormal"><span
style="font-size:12pt">I am also willing to prioritize revision and
submission and
apologize for
not
participating
more over the
summer.</span></p>
<div><span
style="font-size:12pt"> </span><br>
</div>
<p
class="MsoNormal"><span
style="font-size:12pt">Best,</span></p>
<p
class="MsoNormal"><span
style="font-size:12pt">Marcella</span></p>
<div><span
style="font-size:12pt"> </span><br>
</div>
<div
style="border-style:solid
none
none;border-top-width:1pt;border-top-color:rgb(181,196,223);padding:3pt
0in 0in">
<p
class="MsoNormal"
style="margin-bottom:12pt"><b><span style="font-size:12pt">From:<span> </span></span></b><span
style="font-size:12pt">Vp-reproduce-subgroup <</span><a
href="mailto:vp-reproduce-subgroup-bounces@lists.simtk.org"
rel="noreferrer" target="_blank" moz-do-not-send="true"><span
style="font-size:12pt">vp-reproduce-subgroup-bounces@lists.simtk.org</span></a><span
style="font-size:12pt">> on behalf of Jacob Barhak <</span><a
href="mailto:jacob.barhak@gmail.com"
rel="noreferrer" target="_blank" moz-do-not-send="true"><span
style="font-size:12pt">jacob.barhak@gmail.com</span></a><span
style="font-size:12pt">><br>
<b>Date:<span> </span></b>Monday,
August 2, 2021
at 11:45 AM<br>
<b>To:<span> </span></b>Alexander
Kulesza <</span><a
href="mailto:alexander.kulesza@novadiscovery.com" rel="noreferrer"
target="_blank"
moz-do-not-send="true"><span style="font-size:12pt">alexander.kulesza@novadiscovery.com</span></a><span
style="font-size:12pt">><br>
<b>Cc:<span> </span></b></span><a
href="mailto:vp-reproduce-subgroup@lists.simtk.org" rel="noreferrer"
target="_blank"
moz-do-not-send="true"><span style="font-size:12pt">vp-reproduce-subgroup@lists.simtk.org</span></a><span
style="font-size:12pt"><span> </span><</span><a
href="mailto:vp-reproduce-subgroup@lists.simtk.org"
rel="noreferrer" target="_blank" moz-do-not-send="true"><span
style="font-size:12pt">vp-reproduce-subgroup@lists.simtk.org</span></a><span
style="font-size:12pt">>,<span> </span></span><a
href="mailto:vp-integration-subgroup@lists.simtk.org"
rel="noreferrer" target="_blank" moz-do-not-send="true"><span
style="font-size:12pt">vp-integration-subgroup@lists.simtk.org</span></a><span
style="font-size:12pt"><</span><a
href="mailto:vp-integration-subgroup@lists.simtk.org"
rel="noreferrer" target="_blank" moz-do-not-send="true"><span
style="font-size:12pt">vp-integration-subgroup@lists.simtk.org</span></a><s
style="font-size:12pt">>, Jonathan Karr <<a
href="mailto:jonrkarr@gmail.com"
rel="noreferrer" target="_blank" moz-do-not-send="true"><span
style="font-size:12pt">jonrkarr@gmail.com</span></a><span
style="font-size:12pt">>, John Gennari <</span><a
href="mailto:gennari@uw.edu"
rel="noreferrer" target="_blank" moz-do-not-send="true"><span
style="font-size:12pt">gennari@uw.edu</span></a><span
style="font-size:12pt">>, Faeder, James R <</span><a
href="mailto:faeder@pitt.edu"
rel="noreferrer" target="_blank" moz-do-not-send="true"><span
style="font-size:12pt">faeder@pitt.edu</span></a><span
style="font-size:12pt">>, Winston Garira <</span><a
href="mailto:Winston.Garira@univen.ac.za"
rel="noreferrer" target="_blank" moz-do-not-send="true"><span
style="font-size:12pt">Winston.Garira@univen.ac.za</span></a><span
style="font-size:12pt">><br>
<b>Subject:<span> </span></b>Re:
[Vp-reproduce-subgroup] [Vp-integration-subgroup] White paper revision</span></s></p>
</div>
<div
style="border:1pt
solid
red;padding:2pt">
<p
class="MsoNormal"
style="background-color:yellow"><b><span
style="font-size:10pt;font-family:Arial,sans-serif;color:red">External
Email:</span></b><span
style="font-size:10pt;font-family:Arial,sans-serif"> Use caution in
opening links,
attachments,
and buying
gift cards.</span><span
style="font-size:12pt"></span></p>
</div>
<div><span
style="font-size:12pt"> </span><br>
</div>
<div>
<div>
<p
class="MsoNormal"><span
style="font-size:12pt">Hi Alex,<span> </span></span></p>
<div>
<div><span
style="font-size:12pt"> </span><br>
</div>
</div>
<div>
<p
class="MsoNormal"><span
style="font-size:12pt">Thanks for your response first - it is the first
public
response. </span></p>
</div>
<div>
<div><span
style="font-size:12pt"> </span><br>
</div>
</div>
<div>
<p
class="MsoNormal"><span
style="font-size:12pt">However, I was hoping for a discussion rather
than a poll.
We already
made a vote
and the
direction it
took us all
ended up badly
so far - there
is no activity
for a few
months now.
Perhaps a
discussion is
in order
before
making more
decisions. </span></p>
</div>
<div>
<div><span
style="font-size:12pt"> </span><br>
</div>
</div>
<div>
<p
class="MsoNormal"><span
style="font-size:12pt">And Alex, time is something you manage to achieve
certain goals
with certain
priorities. </span></p>
</div>
<div>
<div><span
style="font-size:12pt"> </span><br>
</div>
</div>
<div>
<p
class="MsoNormal"><span
style="font-size:12pt">The real question is if circulating this paper is
on a high
priority list
for any of the
contributors?</span></p>
</div>
<div>
<div><span
style="font-size:12pt"> </span><br>
</div>
</div>
<div>
<p
class="MsoNormal"><span
style="font-size:12pt">Some contributors publicly declared they have
little time,
yet we were
still able to
push though in
the past. What
has changed?</span></p>
</div>
<div>
<div><span
style="font-size:12pt"> </span><br>
</div>
</div>
<div>
<p
class="MsoNormal"><span
style="font-size:12pt">Perhaps a discussion will reveal those things.</span></p>
</div>
<div>
<div><span
style="font-size:12pt"> </span><br>
</div>
</div>
<div>
<p
class="MsoNormal"><span
style="font-size:12pt"> <span> </span>Jacob</span></p>
</div>
<div>
<div><span
style="font-size:12pt"> </span><br>
</div>
</div>
<div>
<div><span
style="font-size:12pt"> </span><br>
</div>
</div>
<div>
<div><span
style="font-size:12pt"> </span><br>
</div>
</div>
<div>
<div><span
style="font-size:12pt"> </span><br>
</div>
</div>
<div>
<div><span
style="font-size:12pt"> </span><br>
</div>
</div>
<div>
<div><span
style="font-size:12pt"> </span><br>
</div>
</div>
<div>
<div><span
style="font-size:12pt"> </span><br>
</div>
</div>
</div>
<div><span
style="font-size:12pt"> </span><br>
</div>
<div>
<div>
<p
class="MsoNormal"><span
style="font-size:12pt">On Mon, Aug 2, 2021 at 2:00 AM Alexander Kulesza
<</span><a
href="mailto:alexander.kulesza@novadiscovery.com" rel="noreferrer"
target="_blank"
moz-do-not-send="true"><span style="font-size:12pt">alexander.kulesza@novadiscovery.com</span></a><span
style="font-size:12pt">> wrote:</span></p>
</div>
<blockquote
style="border-style:none
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0in 0in
6pt;margin:5pt
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<div>
<p
class="MsoNormal"><span
style="font-size:12pt">Dear all, Dear Jacob,</span></p>
<div>
<div><span
style="font-size:12pt"> </span><br>
</div>
</div>
<div>
<p
class="MsoNormal"><span
style="font-size:12pt">I hope that I speak for many others from this
group wishing
that the ideas
presented in
that paper do
get
circulated;
optimally in
form of a
reviewed
paper. </span></p>
</div>
<div>
<div><span
style="font-size:12pt"> </span><br>
</div>
</div>
<div>
<p
class="MsoNormal"><span
style="font-size:12pt">I think that the time of the year impedes many of
us (including
myself) to
spend the time
needed to edit
the sections. </span></p>
</div>
<div>
<p
class="MsoNormal"><span
style="font-size:12pt">I have created the following poll </span><a
href="https://urldefense.com/v3/__https:/doodle.com/poll/ydpgvgi594ubi82d?utm_source=poll&utm_medium=link__;!!K6Z8K8YTIA!VdlFMCuGyTWxTFwAHTufvXzSxbtUQ9ckyDlofvqR1sm1Q-6-HD2vdZtc_2WFaV6WX1c$"
rel="noreferrer" target="_blank" moz-do-not-send="true"><span
style="font-size:12pt">https://doodle.com/poll/ydpgvgi594ubi82d?utm_source=poll&utm_medium=link</span></a><span
style="font-size:12pt"><span> </span>which intends to get agreement or
disgreement of
the group for
the different
optuions that
exist. </span></p>
</div>
<div>
<div><span
style="font-size:12pt"> </span><br>
</div>
</div>
<div>
<p
class="MsoNormal"><span
style="font-size:12pt">Please let me know what you think.</span></p>
</div>
<div>
<p
class="MsoNormal"><span
style="font-size:12pt">Alexander</span></p>
</div>
<div>
<div><span
style="font-size:12pt"> </span><br>
</div>
</div>
<div>
<div><span
style="font-size:12pt"> </span><br>
</div>
</div>
</div>
<div><span
style="font-size:12pt"> </span><br>
</div>
<div>
<div>
<p
class="MsoNormal"><span
style="font-size:12pt">On Thu, 29 Jul 2021 at 16:54, Jacob Barhak <</span><a
href="mailto:jacob.barhak@gmail.com" rel="noreferrer" target="_blank"
moz-do-not-send="true"><span
style="font-size:12pt">jacob.barhak@gmail.com</span></a><span
style="font-size:12pt">>
wrote:</span></p>
</div>
<blockquote
style="border-style:none
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solid;border-left-width:1pt;border-left-color:rgb(204,204,204);padding:0in
0in 0in
6pt;margin:5pt
0in 5pt 4.8pt">
<div>
<p
class="MsoNormal"><span
style="font-size:12pt">Greetings contributors,</span></p>
<div>
<div><span
style="font-size:12pt"> </span><br>
</div>
</div>
<div>
<p
class="MsoNormal"><span
style="font-size:12pt">Two of the contributors approach me about this
message
privately.
However, there
were many more
who
participated
and no one
responded
publicly in 2
weeks. </span></p>
</div>
<div>
<div><span
style="font-size:12pt"> </span><br>
</div>
</div>
<div>
<p
class="MsoNormal"><span
style="font-size:12pt">Do you not want this paper be circulated? </span></p>
</div>
<div>
<div><span
style="font-size:12pt"> </span><br>
</div>
</div>
<div>
<p
class="MsoNormal"><span
style="font-size:12pt">I am asking those questions publicly since this
deserves a
public
discussion.</span></p>
</div>
<div>
<div><span
style="font-size:12pt"> </span><br>
</div>
</div>
<div>
<p
class="MsoNormal"><span
style="font-size:12pt">Hopefully this reminder will stir up the group.</span></p>
</div>
<div>
<div><span
style="font-size:12pt"> </span><br>
</div>
</div>
<div>
<p
class="MsoNormal"><span
style="font-size:12pt"> <span> </span>Jacob</span></p>
</div>
</div>
<div><span
style="font-size:12pt"> </span><br>
</div>
<div>
<div>
<p
class="MsoNormal"><span
style="font-size:12pt">On Wed, Jul 14, 2021 at 4:46 PM Jacob Barhak <</span><a
href="mailto:jacob.barhak@gmail.com" rel="noreferrer" target="_blank"
moz-do-not-send="true"><span
style="font-size:12pt">jacob.barhak@gmail.com</span></a><span
style="font-size:12pt">>
wrote:</span></p>
</div>
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<div>
<p
class="MsoNormal"><span
style="font-size:12pt">Hi Gilberto,<span> </span></span></p>
<div>
<div><span
style="font-size:12pt"> </span><br>
</div>
</div>
<div>
<p
class="MsoNormal"><span
style="font-size:12pt">As you can see, there was no response to
your email -
in fact the
paper writing
stopped - I
waited
sufficient
time to make
sure this is
the case to
prove a point.
If there is no
one to tend to
the editing,
then there
will not be
any progress
and the paper
will lose
focus -
partially because people
will pull it
in many
directions and
resolution
will take time
no one is
willing to
provide to
move it
forward. And
this is what
happened here.</span></p>
</div>
<div>
<div><span
style="font-size:12pt"> </span><br>
</div>
</div>
<div>
<p
class="MsoNormal"><span
style="font-size:12pt">I remind you that I wrote what needs to be done
to make
progress. See
the 4 points
in this
archived
email:</span></p>
</div>
<div>
<p
class="MsoNormal"><a
href="https://urldefense.com/v3/__https:/lists.simtk.org/pipermail/vp-reproduce-subgroup/2021-May/000098.html__;!!K6Z8K8YTIA!VdlFMCuGyTWxTFwAHTufvXzSxbtUQ9ckyDlofvqR1sm1Q-6-HD2vdZtc_2WFEHRSJVg$"
rel="noreferrer" target="_blank" moz-do-not-send="true"><span
style="font-size:12pt">https://lists.simtk.org/pipermail/vp-reproduce-subgroup/2021-May/000098.html</span></a><span
style="font-size:12pt"></span></p>
</div>
<div>
<div><span
style="font-size:12pt"> </span><br>
</div>
</div>
<div>
<p
class="MsoNormal"><span
style="font-size:12pt">By now it's fairly safe to declare that the group
failed to
fulfil those
points in
reasonable
time, and the
revised
version is in
a worse
condition
towards
publication
than the
version we all
agreed to
submit
before. </span></p>
</div>
<div>
<div><span
style="font-size:12pt"> </span><br>
</div>
</div>
<div>
<p
class="MsoNormal"><span
style="font-size:12pt">This situation raises the question.</span></p>
</div>
<div>
<div><span
style="font-size:12pt"> </span><br>
</div>
</div>
<div>
<p
class="MsoNormal"><span
style="font-size:12pt">Is there more benefit from submitting the
findings we
had before as
they were to a
3rd party for
publication
than waiting
for revisions
to end? </span></p>
</div>
<div>
<div><span
style="font-size:12pt"> </span><br>
</div>
</div>
<div>
<p
class="MsoNormal"><span
style="font-size:12pt">I personally doubt that any further revisions
will allow
publication in
reasonable
time - which
as I
mentioned before
delays science
rather than
advancing it.</span></p>
</div>
<div>
<div><span
style="font-size:12pt"> </span><br>
</div>
</div>
<div>
<p
class="MsoNormal"><span
style="font-size:12pt">I assume that this email will start a debate with
different opinions, that may take a long time and this is not my
intention. My
purpose is
practical - I
am trying to
salvage the
paper so it
gets published
quickly. It is
better than
waiting
forever...</span></p>
</div>
<div>
<div><span
style="font-size:12pt"> </span><br>
</div>
</div>
<div>
<p
class="MsoNormal"><span
style="font-size:12pt">I believe that what we accumulated and summarized
in a table is
worth
publication as
we agreed
before. We did
reach a
consensus and
I hope
individuals
will realize
this is the
most practical
course of
action.</span></p>
</div>
<div>
<div><span
style="font-size:12pt"> </span><br>
</div>
</div>
<div>
<p
class="MsoNormal"><span
style="font-size:12pt">Revisions can continue and information added for
future
versions, yet
I do ask that
this paper be
submitted
quickly to a
venue that
will accept it
in the form we
agreed upon. </span></p>
</div>
<div>
<div><span
style="font-size:12pt"> </span><br>
</div>
</div>
<div>
<p
class="MsoNormal"><span
style="font-size:12pt">If we do not do this, we will be guilty of
delaying science. </span></p>
</div>
<div>
<div><span
style="font-size:12pt"> </span><br>
</div>
</div>
<div>
<p
class="MsoNormal"><span
style="font-size:12pt">Hopefully contributors will realize this and we
can proceed to
fix the
situation quickly.</span></p>
</div>
<div>
<div><span
style="font-size:12pt"> </span><br>
</div>
</div>
<div>
<p
class="MsoNormal"><span
style="font-size:12pt"> Jacob</span></p>
</div>
<div>
<div><span
style="font-size:12pt"> </span><br>
</div>
</div>
<div>
<div><span
style="font-size:12pt"> </span><br>
</div>
</div>
<div>
<div><span
style="font-size:12pt"> </span><br>
</div>
</div>
<div>
<div><span
style="font-size:12pt"> </span><br>
</div>
</div>
</div>
<div><span
style="font-size:12pt"> </span><br>
</div>
<div>
<div>
<p
class="MsoNormal"><span
style="font-size:12pt">On Mon, Jun 21, 2021 at 1:06 PM Gilberto
Gonzalez-Parra
<</span><a
href="mailto:gilberto.gonzalezparra@nmt.edu" rel="noreferrer"
target="_blank"
moz-do-not-send="true"><span style="font-size:12pt">gilberto.gonzalezparra@nmt.edu</span></a><span
style="font-size:12pt">> wrote:</span></p>
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<div>
<div>
<p
class="MsoNormal"><span
style="font-size:12pt">Dear all,<span> </span></span></p>
<div>
<div><span
style="font-size:12pt"> </span><br>
</div>
</div>
<div>
<p
class="MsoNormal"><span
style="font-size:12pt">I like Eric's idea i.e. "section heads can look
at the
technical
aspects of
their
respective
sections this
week."</span></p>
</div>
<div>
<div><span
style="font-size:12pt"> </span><br>
</div>
</div>
<div>
<p
class="MsoNormal"><span
style="font-size:12pt">There are many suggestions and I think the
section heads
can focus in
one section to
make the work
more
manageable.
Then we can
read the whole
manuscript to
check the
consistency of
the
manuscript.
Overall, I
think we can
focus on two
main ideas.
One to point
out the
challenges of </span><span
style="font-size:12pt;font-family:Arial,sans-serif">Biosimulation Model
Reproducibility and Model Integration, and some initial basic ideas to
tackle these
issues. That
might be the
main message
of the article
(??)</span><span
style="font-size:12pt"></span></p>
</div>
<div>
<div><span
style="font-size:12pt"> </span><br>
</div>
</div>
<div>
<p
class="MsoNormal"><span
style="font-size:12pt">Best,</span></p>
</div>
<div>
<div><span
style="font-size:12pt"> </span><br>
</div>
</div>
<div>
<p
class="MsoNormal"><span
style="font-size:12pt"><br clear="all">
</span></p>
<div>
<div>
<div>
<div>
<div>
<div>
<div>
<div>
<div>
<p
class="MsoNormal"><span
style="font-size:12pt">***************************************************************************</span></p>
</div>
<div>
<p
class="MsoNormal"><span
style="font-size:12pt">Gilberto C. Gonzalez-Parra, </span><span>Ph.D in
Applied
Mathematics.</span><span
style="font-size:12pt"></span></p>
</div>
<div>
<p
class="MsoNormal"><span>Faculty
of the </span><span
style="font-size:12pt">Mathematics Department</span></p>
<div>
<div>
<p
class="MsoNormal"><span
style="font-size:12pt">New Mexico Tech, NM, USA.</span></p>
</div>
</div>
<div>
<p
class="MsoNormal"><span
style="font-size:12pt">****************************************************************************</span></p>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
<div><span
style="font-size:12pt"> </span><br>
</div>
</div>
</div>
<div><span
style="font-size:12pt"> </span><br>
</div>
<div>
<div>
<p
class="MsoNormal"><span
style="font-size:12pt">On Mon, Jun 21, 2021 at 8:16 AM Eric Forgoston
<</span><a
href="mailto:eric.forgoston@montclair.edu" rel="noreferrer"
target="_blank"
moz-do-not-send="true"><span style="font-size:12pt">eric.forgoston@montclair.edu</span></a><span
style="font-size:12pt">> wrote:</span></p>
</div>
<blockquote
style="border-style:none
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<div>
<p
class="MsoNormal"><span
style="font-size:12pt">Dear all,<span> </span></span></p>
<div>
<div><span
style="font-size:12pt"> </span><br>
</div>
</div>
<div>
<p
class="MsoNormal"><span
style="font-size:12pt">It seems that progress has mostly stalled - there
are numerous
comments/edits
that have been
suggested and
are waiting to
be acted upon
by the section
heads.</span></p>
</div>
<div>
<div><span
style="font-size:12pt"> </span><br>
</div>
</div>
<div>
<p
class="MsoNormal"><span
style="font-size:12pt">I suggest a renewed effort over the next week or
so: perhaps
section heads
can look at
the technical
aspects of
their
respective
sections this
week. Then, if
interested, I
can set up a
poll for a
discussion
next week that
will serve to
resolve and
finalise any
remaining
issues.</span></p>
</div>
<div>
<div><span
style="font-size:12pt"> </span><br>
</div>
</div>
<div>
<p
class="MsoNormal"><span
style="font-size:12pt">Thoughts?</span></p>
</div>
<div>
<div><span
style="font-size:12pt"> </span><br>
</div>
</div>
<div>
<p
class="MsoNormal"><span
style="font-size:12pt">Best wishes,</span></p>
</div>
<div>
<div><span
style="font-size:12pt"> </span><br>
</div>
</div>
<div>
<p
class="MsoNormal"><span
style="font-size:12pt">Eric<br clear="all">
</span></p>
<div>
<div>
<div>
<div>
<div>
<div>
<div>
<div>
<div>
<div>
<div>
<div>
<div>
<div>
<div>
<div>
<div>
<div>
<p
class="MsoNormal"><span
style="font-size:12pt">---------------------<br>
Dr. Eric
Forgoston<br>
Professor of
Applied
Mathematics<br>
Chair,
Department of
Applied
Mathematics
and Statistics<br>
Montclair
State
University<br>
Montclair, NJ
07043 USA<br>
+1 973
655-7242<span> </span><br>
</span><a
href="https://urldefense.com/v3/__https:/eric-forgoston.github.io/__;!!K6Z8K8YTIA!VdlFMCuGyTWxTFwAHTufvXzSxbtUQ9ckyDlofvqR1sm1Q-6-HD2vdZtc_2WF1l-OpF0$"
rel="noreferrer" target="_blank" moz-do-not-send="true"><span
style="font-size:12pt">https://eric-forgoston.github.io/</span></a><span
style="font-size:12pt"></span></p>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
<div><span
style="font-size:12pt"> </span><br>
</div>
</div>
</div>
<div><span
style="font-size:12pt"> </span><br>
</div>
<div>
<div>
<p
class="MsoNormal"><span
style="font-size:12pt">On Mon, Jun 21, 2021 at 5:54 AM Alexander Kulesza
<</span><a
href="mailto:alexander.kulesza@novadiscovery.com" rel="noreferrer"
target="_blank"
moz-do-not-send="true"><span style="font-size:12pt">alexander.kulesza@novadiscovery.com</span></a><span
style="font-size:12pt">> wrote:</span></p>
</div>
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<div>
<p
class="MsoNormal"><span
style="font-size:12pt">Hello all,<span> </span></span></p>
<div>
<div><span
style="font-size:12pt"> </span><br>
</div>
</div>
<div>
<p
class="MsoNormal"><span
style="font-size:12pt">regarding the manuscript, what is the deadline
for
contributions?
I try to find
another slot
for a working
session this
and next week.
Please let me
know where
help is needed
in terms of
editing. </span></p>
</div>
<div>
<div><span
style="font-size:12pt"> </span><br>
</div>
</div>
<div>
<p
class="MsoNormal"><span
style="font-size:12pt">ALexander </span></p>
</div>
</div>
<div><span
style="font-size:12pt"> </span><br>
</div>
<div>
<div>
<p
class="MsoNormal"><span
style="font-size:12pt">On Mon, 24 May 2021 at 18:00, John Gennari <</span><a
href="mailto:gennari@uw.edu" rel="noreferrer" target="_blank"
moz-do-not-send="true"><span
style="font-size:12pt">gennari@uw.edu</span></a><span
style="font-size:12pt">>
wrote:</span></p>
</div>
<blockquote
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<div>
<div><span
style="font-size:12pt"> </span><br>
</div>
<p><span
style="font-size:12pt">Eric:<span> </span></span></p>
<p><span
style="font-size:12pt">Yes,
I do see your
changes.
Thanks!</span></p>
<p><span
style="font-size:12pt">-John
G.<span> </span></span></p>
<div>
<p
class="MsoNormal"><span
style="font-size:12pt">On 5/24/2021 4:47 AM, Eric Forgoston wrote:</span></p>
</div>
<blockquote
style="margin-top:5pt;margin-bottom:5pt">
<div>
<div>
<div>
<div>
<p
class="MsoNormal"
style="margin-bottom:12pt"><span style="font-size:12pt">Hi Jacob and
all,</span></p>
</div>
<p
class="MsoNormal"
style="margin-bottom:12pt"><span style="font-size:12pt">I did rewrite
the stochastic
section adding
in material
from me and
comments from
William and
James G. The
only material
I removed had
been written
by myself
originally.</span></p>
</div>
<div>
<p
class="MsoNormal"><span
style="font-size:12pt">Additional comments are welcome.</span></p>
</div>
<div>
<div><span
style="font-size:12pt"> </span><br>
</div>
</div>
<p
class="MsoNormal"
style="margin-bottom:12pt"><span style="font-size:12pt">Cheers,</span></p>
</div>
<p
class="MsoNormal"><span
style="font-size:12pt">Eric<br clear="all">
</span></p>
<div>
<div>
<div>
<div>
<div>
<div>
<div>
<div>
<div>
<div>
<div>
<div>
<div>
<div>
<div>
<div>
<div>
<div>
<div>
<div>
<div>
<div>
<p
class="MsoNormal"><span
style="font-size:12pt">---------------------<br>
Dr. Eric
Forgoston<br>
Professor of
Applied
Mathematics<br>
Chair,
Department of
Applied
Mathematics
and Statistics<br>
Montclair
State
University<br>
Montclair, NJ
07043 USA<br>
+1 973
655-7242<span> </span><br>
</span><a
href="https://urldefense.com/v3/__https:/eric-forgoston.github.io/__;!!K6Z8K8YTIA!VdlFMCuGyTWxTFwAHTufvXzSxbtUQ9ckyDlofvqR1sm1Q-6-HD2vdZtc_2WF1l-OpF0$"
rel="noreferrer" target="_blank" moz-do-not-send="true"><span
style="font-size:12pt">https://eric-forgoston.github.io/</span></a><span
style="font-size:12pt"></span></p>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
<div><span
style="font-size:12pt"> </span><br>
</div>
</div>
</div>
</div>
</div>
</div>
<div><span
style="font-size:12pt"> </span><br>
</div>
<div>
<div>
<p
class="MsoNormal"><span
style="font-size:12pt">On Mon, May 24, 2021 at 6:55 AM William Waites
<</span><a
href="mailto:wwaites@ieee.org" rel="noreferrer" target="_blank"
moz-do-not-send="true"><span
style="font-size:12pt">wwaites@ieee.org</span></a><span
style="font-size:12pt">>
wrote:</span></p>
</div>
<blockquote
style="border-style:none
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0in 0in
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0in 5pt 4.8pt">
<p
class="MsoNormal"><span
style="font-size:12pt">> Otherwise, all I saw was …<br>
<br>
There was
editing of the
section on
stochasticity
by Eric with
some input
from myself.<span> </span><br>
<br>
_______________________________________________<br>
Vp-reproduce-subgroup mailing list<br>
</span><a
href="mailto:Vp-reproduce-subgroup@lists.simtk.org"
rel="noreferrer" target="_blank" moz-do-not-send="true"><span
style="font-size:12pt">Vp-reproduce-subgroup@lists.simtk.org</span></a><span
style="font-size:12pt"><br>
</span><a
href="https://urldefense.com/v3/__https:/lists.simtk.org/mailman/listinfo/vp-reproduce-subgroup__;!!K6Z8K8YTIA!VdlFMCuGyTWxTFwAHTufvXzSxbtUQ9ckyDlofvqR1sm1Q-6-HD2vdZtc_2WFyiepMXg$"
rel="noreferrer" target="_blank" moz-do-not-send="true"><span
style="font-size:12pt">https://lists.simtk.org/mailman/listinfo/vp-reproduce-subgroup</span></a><span
style="font-size:12pt"></span></p>
</blockquote>
</div>
</blockquote>
</div>
<p
class="MsoNormal"><span
style="font-size:12pt">_______________________________________________<br>
Vp-reproduce-subgroup mailing list<br>
</span><a
href="mailto:Vp-reproduce-subgroup@lists.simtk.org"
rel="noreferrer" target="_blank" moz-do-not-send="true"><span
style="font-size:12pt">Vp-reproduce-subgroup@lists.simtk.org</span></a><span
style="font-size:12pt"><br>
</span><a
href="https://urldefense.com/v3/__https:/lists.simtk.org/mailman/listinfo/vp-reproduce-subgroup__;!!K6Z8K8YTIA!VdlFMCuGyTWxTFwAHTufvXzSxbtUQ9ckyDlofvqR1sm1Q-6-HD2vdZtc_2WFyiepMXg$"
rel="noreferrer" target="_blank" moz-do-not-send="true"><span
style="font-size:12pt">https://lists.simtk.org/mailman/listinfo/vp-reproduce-subgroup</span></a><span
style="font-size:12pt"></span></p>
</blockquote>
</div>
<p
class="MsoNormal"><span
style="font-size:12pt"><br clear="all">
</span></p>
<div>
<div><span
style="font-size:12pt"> </span><br>
</div>
</div>
<p
class="MsoNormal"><span
style="font-size:12pt">--<span> </span></span></p>
<div>
<div>
<div>
<div>
<p
class="MsoNormal"><span
style="font-size:10pt;font-family:Arial,sans-serif;color:rgb(35,35,73)">Alexander
Kulesza</span><span
style="font-size:12pt"></span></p>
</div>
<div>
<p
class="MsoNormal"><span
style="font-size:8.5pt;font-family:Arial,sans-serif;color:rgb(52,70,115)">Team
leader</span><span
style="font-size:12pt"></span></p>
</div>
<div>
<p
class="MsoNormal"><span
style="font-size:8.5pt;font-family:Arial,sans-serif;color:rgb(82,135,189)">Modeling
&
simulation /
Biomodeling</span><span
style="font-size:12pt"></span></p>
</div>
<div>
<p
class="MsoNormal"><a
href="mailto:alexander.kulesza@novadiscovery.com" rel="noreferrer"
target="_blank"
moz-do-not-send="true"><span
style="font-size:8.5pt;font-family:Arial,sans-serif;color:rgb(128,134,150)">alexander.kulesza@novadiscovery.com</span></a><span
style="font-size:12pt"></span></p>
</div>
<div>
<p
class="MsoNormal"><span
style="font-size:8.5pt;font-family:Arial,sans-serif;color:rgb(128,134,150)">+33
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<p
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------------------ <span> </span></p>
<div>
<p
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Liu,
Professor </p>
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<div>
<p
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of Mechanical
Engineering
and Mechanics </p>
</div>
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<p
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University </p>
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<pre>_______________________________________________
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<pre class="moz-quote-pre" wrap="">_______________________________________________
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</pre>
</blockquote>
<pre class="moz-signature" cols="72">--
James A. Glazier, PhD
Professor of Intelligent Systems Engineering, Adjunct Professor of Physics
Director, Biocomplexity Institute
Indiana University, Bloomington
(812) 391-2159 (cell)</pre>
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