[Feature-dev] Re: FEATURE Test Failures

[Mike Wong]

If the feature vectors are mostly '0', then the problem could be a dirty test environment.

Go to the 'tests/' directory and 'make clean' and re-run the tests.

I've changed the test Makefile so all tests clean up prior to running. This behavior may not be the friendliest for retroactive testing, but we'll see...

Blast, does that mean that I need to add tests that test the tests to complete our QA process?

Cheers,

- m.

 __________________________________
Mike Wong, Staff Research Associate
Center for Computing for Life Sciences (CCLS)
San Francisco State University
1600 Holloway Avenue, Hensill Hall 301, SF, CA 94132
(415) 405-2119
mikewong at sfsu.edu




________________________________
From: Trevor Blackstone <tblackstone at gmail.com>
To: Mike Wong <mikewong at sfsu.edu>
Cc: Gurgen Tumanyan <tumanian at gmail.com>; Marc Sosnick <marcsosnick at mac.com>
Sent: Tue, November 17, 2009 11:03:10 AM
Subject: FEATURE Test Failures

Mike, I just finished a clean Fedora install and checked out the sources, but running 'make test' is giving me errors in the feature vectors.  I thought it was just a precision error because I didn't replace the tests/hits folder with my own version, but looking at a diff of the *.ff files shows entries in each vector that are consistently 0 in the current build, but are whole numbers in the r418 hits.  E.g., when I generate tests/testout/trypsin_ser_og.pos.ff, vector entry 34 is always 0, but the same entries in tests/hits/trypsin_ser_og.pos.ff contain 7, 0, 21, 8, 4....  Several other entries have differences as well. I've checked out several versions back to r550 and so far the results are the same - each revision differs from the hits with entries all set to 0.

I'm hoping this is a simple error on my part for not configuring the test environment correctly, but could someone take a look at some of the older revisions to confirm if a problem exists, or if I should even be concerned with this?

Trevor
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