[RNABuilder-help] About compiling the source codes.

[Samuel Coulbourn Flores]

Hi Zhiyong,

Why do you want to compile from source?  I have Linux (and Windows and Mac) binaries here:

https://simtk.org/project/xml/downloads.xml?group_id=359

Sam


On Oct 29, 2010, at 11:53 PM, Zhiyong Wang wrote:

> Hi, I passed cmake step but got stuck at make. I got those information
> when I tried to compile source codes of rnabuilder 2.0.
> Anyone can help me? Thanks a lot.
> 
> 
> [  0%] Built target COPY_LAPACK
> [ 20%] Building CXX object CMakeFiles/RNABuilder.dir/src/RNABuilder.o
> In file included from /usr/include/c++/4.4/ext/hash_map:60,
>                 from /usr/local/SimTK/include/molmodel/internal/VoxelHash.h:11,
>                 from
> /usr/local/SimTK/include/molmodel/internal/AtomSubsystem.h:6,
>                 from /usr/local/SimTK/include/SimTKmolmodel.h:90,
>                 from
> /home/wzy/packages/rnabuild/src/rnatoolbox/trunk/src/RNABuilder.cpp:34:
> /usr/include/c++/4.4/backward/backward_warning.h:28: warning: #warning
> This file includes at least one deprecated or antiquated header which
> may be removed without further notice at a future date. Please use a
> non-deprecated interface with equivalent functionality instead. For a
> listing of replacement headers and interfaces, consult the file
> backward_warning.h. To disable this warning use -Wno-deprecated.
> In file included from /usr/local/SimTK/include/SimTKcommon/basics.h:52,
>                 from /usr/local/SimTK/include/SimTKcommon.h:40,
>                 from /usr/local/SimTK/include/SimTKsimbody.h:70,
>                 from /usr/local/SimTK/include/SimTKmolmodel.h:86,
>                 from
> /home/wzy/packages/rnabuild/src/rnatoolbox/trunk/src/RNABuilder.cpp:34:
> /usr/local/SimTK/include/SimTKcommon/internal/String.h:296: error:
> explicit template specialization cannot have a storage class
> /usr/local/SimTK/include/SimTKcommon/internal/String.h:301: error:
> explicit template specialization cannot have a storage class
> make[2]: *** [CMakeFiles/RNABuilder.dir/src/RNABuilder.o] Error 1
> make[1]: *** [CMakeFiles/RNABuilder.dir/all] Error 2
> make: *** [all] Error 2
> 
> 
> -- 
> Wang Zhiyong
> TTI-C
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