[Vp-integration-subgroup] Licensing issues
Tomas Helikar
thelikar2 at unl.edu
Tue Jan 26 06:26:05 PST 2021
Hi everyone,
At our university (University of Nebraska), the university system
retains the copyright, but the investigator is free to set up whatever
license they want. I'm curious to see if there even is a university (or
their tech transfer office) that would dictate which OS license the
investigator should use.
Best,
Tomas Helikar, Ph.D.
Associate Professor
Department of Biochemistry | University of Nebraska-Lincoln
m: 402-547-8904 <callto:402-547-8904> | o: 402-472-3530
<callto:402-472-3530>
www.helikarlab.org <http://www.postbox-inc.com> | cellcollective.org
<http://helikarlab.org>
twitter: @helikarlab <http://twitter.com/helikarlab>, @biocollective
<http://twitter.com/biocollective>
On 1/26/21 3:52 AM, Robin Thompson wrote:
> Non-NU Email
> ------------------------------------------------------------------------
> That sounds great, thanks both. I will let you know when I hear back
> about Oxford’s policy on commercial use of IP. As above, all authors
> are happy with this in principle (we are grateful that others might
> want to use our models!)
>
> Best wishes,
> Robin
>
> ----------------------------------------------------------------------
> Dr Robin Thompson
> Assistant Professor of Mathematical Epidemiology
> Mathematics Institute
> University of Warwick, UK
> www.robin-thompson.co.uk
> <https://urldefense.proofpoint.com/v2/url?u=http-3A__www.robin-2Dthompson.co.uk&d=DwMFaQ&c=Cu5g146wZdoqVuKpTNsYHeFX_rg6kWhlkLF8Eft-wwo&r=ct8WBL42ANwALp5sfmoKGqugGgF8k0-4cJjYaO-gSGg&m=-Yw1BpFxFm-_p8faDgx1YrsNo8j6cSOXM9OBk7XqvJk&s=N3BoKaIVANlvX-Y4BnCQHSQxKYy32mZNJ2Q9_AwX9lg&e=>
> ----------------------------------------------------------------------
>
>> On 26 Jan 2021, at 00:47, Jacob Barhak <jacob.barhak at gmail.com
>> <mailto:jacob.barhak at gmail.com>> wrote:
>>
>> Yes Sheriff,
>>
>> This makes sense if Robin and his co-authors want to invest more time
>> to invest in the archiving process - which I support.
>> However, the license issue needs to be resolved first. You see, for
>> anyone to release the model into-biomodels they need to give away
>> copyright to release under CC0.
>>
>> And this is basically what I was asking - what is the licensing
>> policies the institution has? For example, can the authors waive
>> copyright in that institution?
>>
>> If the answer is yes and I get permission, I promise to upload a
>> simplified version of one of their models to Bio-Models - one that I
>> have implemented with the authors permission.
>>
>> This will be a nice example of what should be done for models.
>> However, this email thread was intended to show the differences in
>> approach for licensing and float it up. Not all institutions allow
>> everything to creators - it varies and conditional on many factors
>> that may change.
>>
>> I hope it is possible.
>>
>> Jacob
>>
>>
>>
>>
>>
>> On Mon, Jan 25, 2021 at 6:10 PM Rahuman Sheriff <sheriff at ebi.ac.uk
>> <mailto:sheriff at ebi.ac.uk>> wrote:
>>
>> Dear Robin and Jacob,
>> I am happy to support, if you would like the model to be
>> deposited to BioModels repository [1].
>> Not only the models gets higher visibility, it might be
>> potentially curated and annotated and therefore can attract
>> higher citation.
>>
>> Best regards
>> Sheriff
>>
>> [1] https://academic.oup.com/nar/article/48/D1/D407/5614569
>> <https://urldefense.proofpoint.com/v2/url?u=https-3A__academic.oup.com_nar_article_48_D1_D407_5614569&d=DwMFaQ&c=Cu5g146wZdoqVuKpTNsYHeFX_rg6kWhlkLF8Eft-wwo&r=ct8WBL42ANwALp5sfmoKGqugGgF8k0-4cJjYaO-gSGg&m=-Yw1BpFxFm-_p8faDgx1YrsNo8j6cSOXM9OBk7XqvJk&s=QT4smRgJIXEaNNY8dtot9JqoHZHCMy6ZYNpNs6YvOaE&e=>
>>
>>> On 24 Jan 2021, at 18:05, Robin Thompson
>>> <robin.thompson1988 at gmail.com
>>> <mailto:robin.thompson1988 at gmail.com>> wrote:
>>>
>>> Hi Jacob,
>>>
>>> Thanks for your email. I have asked the relevant person at
>>> Oxford University (the institution I was at when this research
>>> was undertaken), and I will let you know when I hear back from them.
>>>
>>> Thanks, and best wishes,
>>> Robin
>>>
>>> ----------------------------------------------------------------------
>>> Dr Robin Thompson
>>> Assistant Professor of Mathematical Epidemiology
>>> Mathematics Institute
>>> University of Warwick, UK
>>> www.robin-thompson.co.uk
>>> <https://urldefense.proofpoint.com/v2/url?u=http-3A__www.robin-2Dthompson.co.uk_&d=DwMFaQ&c=Cu5g146wZdoqVuKpTNsYHeFX_rg6kWhlkLF8Eft-wwo&r=ct8WBL42ANwALp5sfmoKGqugGgF8k0-4cJjYaO-gSGg&m=-Yw1BpFxFm-_p8faDgx1YrsNo8j6cSOXM9OBk7XqvJk&s=U2uKHMmBHfzYm_789nU7zyYRHmlTBaSAuEPF0wluqYo&e=>
>>> ----------------------------------------------------------------------
>>>
>>>> On 22 Jan 2021, at 20:37, Jacob Barhak <jacob.barhak at gmail.com
>>>> <mailto:jacob.barhak at gmail.com>> wrote:
>>>>
>>>> Hi Robin, and anyone else who wants to comment,
>>>>
>>>> When integrating your model, you may recall I asked for
>>>> permissions to use it and mentioned licensing issues.
>>>>
>>>> One of your responses was that you have to check with your
>>>> institution regarding commercial use while you yourself were ok
>>>> with me reusing your model and had no restrictions.
>>>>
>>>> I wish to explore the licensing issue in this mailing list to
>>>> show what are approaches of different institutions and
>>>> individuals to the problem.
>>>>
>>>> Is it possible for you to check about the policy in your
>>>> institution? The idea is to show some examples of how
>>>> institutions approach the issue. For example, do they delegate
>>>> the decision to researchers? Do they have a policy about who
>>>> holds the copyright? How do they treat commercial entities?
>>>>
>>>> I know in the US, a faculty member in most cases retains rights
>>>> for their work, this does not always extend to staff and I am
>>>> not sure about students. I also know that some academic
>>>> institutions support tech transfer through patents and other
>>>> endeavours.
>>>>
>>>> I was trying to discuss licenses here:
>>>> https://forum.comses.net/t/issues-with-regard-to-call-for-transparency-of-covid-19-models/8433
>>>> <https://urldefense.proofpoint.com/v2/url?u=https-3A__forum.comses.net_t_issues-2Dwith-2Dregard-2Dto-2Dcall-2Dfor-2Dtransparency-2Dof-2Dcovid-2D19-2Dmodels_8433&d=DwMFaQ&c=Cu5g146wZdoqVuKpTNsYHeFX_rg6kWhlkLF8Eft-wwo&r=ct8WBL42ANwALp5sfmoKGqugGgF8k0-4cJjYaO-gSGg&m=-Yw1BpFxFm-_p8faDgx1YrsNo8j6cSOXM9OBk7XqvJk&s=gH5csg3_h8RTAcz5uHrxGVuUx-7fyJTy-Xmq956sPAA&e=>
>>>>
>>>>
>>>> Yet this discussion was not concluded.
>>>>
>>>> One notable approach that Sheriff made me aware of is taken by
>>>> BioModels:
>>>> http://www.ebi.ac.uk/biomodels/faq
>>>> <https://urldefense.proofpoint.com/v2/url?u=http-3A__www.ebi.ac.uk_biomodels_faq&d=DwMFaQ&c=Cu5g146wZdoqVuKpTNsYHeFX_rg6kWhlkLF8Eft-wwo&r=ct8WBL42ANwALp5sfmoKGqugGgF8k0-4cJjYaO-gSGg&m=-Yw1BpFxFm-_p8faDgx1YrsNo8j6cSOXM9OBk7XqvJk&s=KS6kRQBfSpa4lpZQ01NJ73yFXAOeIisbWFDK911tRl8&e=>
>>>> They avoid the licensing issues by making all models available
>>>> under CC0
>>>>
>>>> I am showing here some aspects of the issue and asking for you
>>>> to check with your institution to explore all aspects of this
>>>> issue so we can properly report those in the white paper.
>>>>
>>>> Jacob
>>>>
>>>>
>>>>
>>>>
>>>>
>>>
>>
>
>
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