[Vp-reproduce-subgroup] I'd linke to reemphasize that having a formal and complete conceptual model is critical for any shareable or reusable model

Jacob Barhak jacob.barhak at gmail.com
Thu Mar 25 14:18:58 PDT 2021


Thanks James,

With your permission I added this topic to the mailing list - we may want
to continue this discussion and let more people comment on this. So please
reply to all to move your responses to the mailing list.

I agree that standards may not hold for conceptual models unless you have
perfected a specific method to create those and attract more people to use
it.

However, the sad part is that the modeling community needs standards to
allow utility and integration of models and we really lack those now.

                 Jacob

On Thu, Mar 25, 2021 at 2:55 PM James A Glazier <jaglazier at gmail.com> wrote:

> Conceptual model specification is the single most important thing to
> have for reproducibility. The mathematical models and computer
> simulations are intrinsically less sharable.
>
> SBML allows conceptual model specification (for a very limited range of
> models)
>
> But standards are not essential for conceptual model specification,
> doing it even in tabular form is much better than nothing.
>
> JAG
>
>
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